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13-5212-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4929192 [Map]; Strand: c
      • AT1G14400.1 - [+] show detail - ubiquitin carrier protein 1
        Distance: -502; Region: promoter
      • AT1G14400.2 - [+] show detail - ubiquitin carrier protein 1
        Distance: -659; Region: promoter
      • AT1G14410.1 - [+] show detail - ssDNA-binding transcriptional regulator
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 13-5212-1 - 5-prime edge 
    TTCGTAGGTA GCAGAAGAGA CTAAAAGTAG TTTATTTTTT CGTCCTTTTG 
    ACCAAATGTT CAAAAGCCAC ATCATTTCGT GGTAAGCGGT TGTATCTCAA 
    AACATCAGTC TGATCTTAGT TGTTTTTGAT TTAAGAGCAA ATCTCAATTT 
    GAAGTCTGAG TACGAGCTAG TATGATCCAA ATGCCTAGGC TTTGAGACGA 
    GGCTTGAAGA TGAATTGGTT TGTCTAGAGA GATTGGAGAA ACAAGACATA 
    CCACAAAAAC ATTTCTCTCT AGTAACAAAA ACATCACTCT ACTCTACTCT 
    TGTGGTTTGG GTCTGGATTT TAGTCCGGTT AGTGGTACAA TGGTTTATAT 
    TGGTTTATTA GAAATATATA GTTTACGCTA CATTAAGAAA AGTACTCTAA 
    TTTGTCATCT GAAGATTTAC ATAAAAAAGA TTACATGTCA TCGTTGTATG 
    TTAACTAACA CTAATCTCCC GGTTAAAGTG TAGATTGCCC TAAACGGTTT 
    AATTCCGGTT AGGAACAAAC CAACCACTCN CTCGGTCGTC CAAAGGGCAA 
    AGCGAATCCA ACTTTACAGA TATGTNNNAN AGGAGCCAAG CTNNANNNNG 
    GGCCGNNNCC NNCGGCCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4929308 [Map]; Strand: c
      • AT1G14400.1 - [+] show detail - ubiquitin carrier protein 1
        Distance: -618; Region: promoter
      • AT1G14400.2 - [+] show detail - ubiquitin carrier protein 1
        Distance: -775; Region: promoter
      • AT1G14410.1 - [+] show detail - ssDNA-binding transcriptional regulator
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: 13-5212-1 - 3-prime edge 
    CCTACGAACA TATATCAATC CTGACGAAAC CTATCAGCAA AACAAAAAGG 
    GTAGGATGAT CTCTGATATA TGTTCCTGTT ATGGCCCTAA GATTCATCAT 
    CTATTCCATT CATAGTCTCC TCCATAGTTA GGCGAAGCGT TGTTCACACN 
    GGCTTGTCTC TTCTGGTTTG ATGGAGTTTG CAAATGCATG CCAGCCTATA 
    AGGTAAGGCA AGACAAACTT GCAATATAGA AGAAAAAAAG GAGTTTAGTA 
    ATGTTTCTTT GAAAGTTCAT GCCGGTAATG TTAAAGATGA GATATTTTCT 
    GATCTTACAT TGAATGCAGA GATAAGAACA GCAAACTCTG CTCGAGTAAT 
    TGGTATGTAA ATGCTCTCAT CCACATTCAC AAGCT

AT1G14400.1

Model type
Protein coding
Short Description
ubiquitin carrier protein 1
Curator Summary
ubiquitin carrier protein
Computational Description
ubiquitin carrier protein 1 (UBC1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 10640 Blast hits to 10586 proteins in 402 species: Archae - 0; Bacteria - 2; Metazoa - 4553; Fungi - 2331; Plants - 2017; Viruses - 26; Other Eukaryotes - 1711 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14400.2

Model type
Protein coding
Short Description
ubiquitin carrier protein 1
Curator Summary
ubiquitin carrier protein
Computational Description
ubiquitin carrier protein 1 (UBC1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G14410.1

Model type
Protein coding
Short Description
ssDNA-binding transcriptional regulator
Curator Summary
Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length.
Computational Description
WHIRLY 1 (WHY1); FUNCTIONS IN: DNA binding, telomeric DNA binding; INVOLVED IN: negative regulation of telomere maintenance via telomerase, defense response; LOCATED IN: plastid chromosome, chloroplast, nucleoid, telomerase holoenzyme complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ssDNA-binding transcriptional regulator (InterPro:IPR009044), Plant transcription factor (InterPro:IPR013742); BEST Arabidopsis thaliana protein match is: ssDNA-binding transcriptional regulator (TAIR:AT2G02740.2); Has 106 Blast hits to 105 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 96; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR