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13-5219-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12950033 [Map]; Strand: w
      • AT4G25310.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5219-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCACTATT TTTGTTTATC GATATTGCTC CACAAAAACT
    CATTCCGTAC AAAACAATTC CATGTTTTTG TACGTGTTTG CGTATACAAC
    AACCCCATAT GGATTTCAAA TTTATACCCT TGTGGCATGT TTTTATGATT
    ATCAAACAGC TTGTAAACCA TGGAATGGAC TTGGACAAAT TCAAGTCTGA
    TATTCAAGAT TTCTTCAACC TTCCCATGGA AGAGAAGAAG AAGCTGTGGC
    AACAACCCGG TGATATCGAA GGGTTTGGAC AAGCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13397617 [Map]; Strand: c
      • AT4G26540.1 - [+] show detail - Leucine-rich repeat receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G26542.1 - [+] show detail
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-5219-1 - 3-prime edge
    CCTTCTAGAT TGTTAGTGTT CAGAGACAGA GTCTTGAGTT TCTTGAGCCT 
    GAAGATTTCC ACAGGGATAT CACCGGAGAG AGAATTATCC GACAAATCGA
    GTAACTCAAG CTCCGTGAAG TCTCCGATCT CCTTGGGGAT TACTCCGGTG
    AGATTCAGTG AAGATAAAGT GAGGGAAGTA AGAGACTTGA GGCTCCGGAG
    ACTAGTCACC GGCAGAGAAC CTTGCAAGTC CATACCTTTG AGCTGTATCT
    CCGAAACTTC ACCTCTACGG TTACATTTTA CGCCGACCCA ATTGCAGGGA
    GATGTGTCGG CGACGTGCCA GGAGGAAAAA GCGTCGCCGG AGATGTTCAG
    TTGAGACTTC CATGACAAGA GAGCTTGACC TTGTTGGTCG AGAGAGAAAC
    AGGGGATGAA GAAGAAACAG AGTAGGGATG AGAAGAAGGA GAGTCTATAG
    ATATTTGGTG GCATCGGAGA AGACGAAGAT GAGGAAGAAG AATGAGAGAA
    GTGCGTTGGG ATTGTAAAGC GAAGAACCAA TCCATCGGTT TTGGTTTTAT
    TTTGTTTATA GGAAATATAT AAATAAACAC AGAGCANAGA GAGAAGTAGC
    AAAGGAAGGT TTTTGATCCC AACAAAGTTT CTATCACTAA CCCTTTAGTA
    TTATTTTTAA TCTTTGCTTT TGATTTTTGT AAAATTGAAA AAACANTTAC
    CCTAANTAGT CCTAATTAAA N

AT4G25310.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G25300.1); Has 8508 Blast hits to 8467 proteins in 1001 species: Archae - 0; Bacteria - 1107; Metazoa - 113; Fungi - 987; Plants - 4952; Viruses - 0; Other Eukaryotes - 1349 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26540.1

Model type
Protein coding
Short Description
Leucine-rich repeat receptor-like protein kinase family protein
Computational Description
Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G56040.2); Has 218237 Blast hits to 120439 proteins in 3896 species: Archae - 151; Bacteria - 20470; Metazoa - 64079; Fungi - 7848; Plants - 101542; Viruses - 308; Other Eukaryotes - 23839 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26542.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G26540
Link
InterPro Scan - TAIR