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13-5247-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18001156 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6422; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 156; Region: intergenic
    Flanking Genome Sequence: 13-5247-1 - 5-prime edge
    GTCACNGGGA TAANANATNT NGAATCTTGN ATGGAAAATG CNNTTACCAT 
    TGGTTTTTAA TTGAAATGTG CTCATATGGG CCGNGGTTNC CAAATTAAAT
    AAAACTACAG ATGTCATCGA GAAGTAAAAT CAACNTGTGT CCACATTATC
    AGTTTTGTGT ATACGATGAA ATAGGGTAAT TCAAAATCTA GCTTGATATG
    CCTTTTGGTT CATTTTAACC TTCTGTAAAC ATTTTTTCAG ATTTTGAACA
    AGTAAATCCA AAAAAAAAAA AAAAAAANTN NCNCCCNNCC CNAAAATTTT
    TTNANNNTNA AAAAAANNNN AAAAAATTNG GGTTNAAAAA AAAAAACCNA
    AAAANNNAAA AANCNTTNGN AANNGNANNN NAAAAAAANN CCNNANGGGG
    GNTNNAAAAA AATTTTTNGG NTNGGGGNNC CCNNNNCCCN AAANGGNAAN
    NCAAAAACCC CTNTTAAAAN TTGGNNNGGG NNAANTTTTA AAAANNTTTT
    TTTTTTTTNA NAGNGNAAAA AAATTTNNNN NNGGGGGGGG GAAAANCCCG
    GNNNNTTNNA
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18001265 [Map]; Strand: c
      • AT3G48550.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TA...
        Distance: 6531; Region: intergenic
      • AT3G48560.1 - [+] show detail - chlorsulfuron/imidazolinone resistant 1
        Distance: 47; Region: intergenic
    Flanking Genome Sequence: 13-5247-1 - 3-prime edge
    TNGGTGATGG TACCATCTAC NATTGGGAAT CTCCACAAAT TGGAGTTGTT 
    GGAAATGAAN GAATGCTCAG CTCTGGAGGT TCTGNCACNC GGNGNCAANA
    TGGTCACTCT NTTCGANATC ATCAATCTNN ATGGGGGCAC AANGGAGACC
    AAGNCTACCA ACACGCGGGC CGTAGTCTNA CCTTGNCCAA AAAGCAGGCA
    GATCAACAAC TAAAAGAAAC TCAAATTACC AAAACAAACA GGAAATTGCA
    AACTAAGTTT TTTTACCATA TGCATACAAA GACCATAAAA GGTTCTGATA
    ATCACCGGTT TCATCTCTCA GTATTTAATC CGGCCATCTC CTTCCGTTAT
    GACATCGTTG AAAGTGCCAC CACTCGGGAT CATCGGCAAC ACATGTTCTT
    GGTGCGGACA AATCACATCC AACAGGTAAG GTCCTGGTGT ATCCAGCATT
    GTCTGAATAG CTTCTCGGAG ATCTGCTTTC TTTGTCACCC TCNCCGNTGG
    AATCCCGCAA GCTGCTGCAA ACAGCAACAT GTTCGGGAAT ATCTCGTCCT
    CCTGAGCCGG ATC

AT3G48550.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has 78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G48560.1

Model type
Protein coding
Short Description
chlorsulfuron/imidazolinone resistant 1
Curator Summary
Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
Computational Description
chlorsulfuron/imidazolinone resistant 1 (CSR1); FUNCTIONS IN: acetolactate synthase activity, pyruvate decarboxylase activity; INVOLVED IN: branched chain family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Acetolactate synthase, large subunit, biosynthetic (InterPro:IPR012846), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT5G17380.1); Has 30963 Blast hits to 30605 proteins in 2694 species: Archae - 488; Bacteria - 17421; Metazoa - 266; Fungi - 871; Plants - 599; Viruses - 25; Other Eukaryotes - 11293 (source: NCBI BLink).
Link
InterPro Scan - TAIR