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13-5271-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7890574 [Map]; Strand: w
      • AT1G22340.1 - [+] show detail - UDP-glucosyl transferase 85A7
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5271-1 - 5-prime edge
    CTCAAGATTC ATGACCGACG AACCATGTTT ATACCTCGTC GCTTCCTCGG 
    CCAACCGCCG CCACTCTTCC GCCTTTTCTC TCAGCTTTTT CCCCTTTTCT
    CCATCCATAA GTTCTCTAAC CACCGTCTCG ACCTCCTCTC TCTTCACATC
    TTTACCAATC TCTATACCCA CTCCCCACTC GTCACAACAA AACTTACAAT
    TCGTCGGTTG CTCCGAAAAA CATGGCCAAC ATATCATCGG AACACCACCA
    GCGAGACTCT CCAATGTTGA GTTCCACCCG CAATGCGTCA AGAACCCTCC
    TATCGCGGGA TGAGAAAGAA CTTTCTCCTG AGGAC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7890458 [Map]; Strand: w
      • AT1G22330.1 - [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
        Distance: 924; Region: intergenic
      • AT1G22340.1 - [+] show detail - UDP-glucosyl transferase 85A7
        Distance: 6; Region: intergenic
    Flanking Genome Sequence: 13-5271-1 - 3-prime edge
    ATCTTGAGAC GCTTATACAT AAAGTTTTCT TAGAAAATCT TAGATGAGAA 
    AAGTTCTAAT GCGGTAGTTA ATTACAAATA TCATATGATA GTTTTGGTGG
    TAGACCCTAG AGGCCTATAG ATGTGTTACC TCGTTTCTTT TATATAATTA
    TAATTGGTCT TTATTTTCTG TTTGTAATCA GTGTAAATTG CTATAGAATA
    ACTTTAGCAT AATAACTTTT ATTTTTGTTT GTTGATACCA AAATATTGTT
    AGAATCACAC CACTAATATA AACTTCAACA AAAAAAAAAC TTCNTNTTTT
    CCTGNGCAAN ANGTNCTACG GAANCAAATT TTGTNTTCAA GTNTAAAAAA
    AAACACATTT CCTGNGCAAN AAAACAAGTC CTNTNTACAT NTTTTCGCNC
    CTTGCCNACC ANTNGGCNAA TGAAAGGNCN CTCTTGCTGG AGGCGGTCCG
    TAGGTAAAAG GNCCTTTNGG GTCAAAATCA NCGGGGCNCC CANTNTGTTN
    TGTNTNCGGC CCGGCCCACT NTATCCTATG GGAGGNGGGA AGTTAAATAG
    TGGNATTTNA ATCATCAANC TTATGGAGTT TTGACAANGT ANCCGAACAT
    NTNCCCAAAA ACGGGNTTTT ATCATCAATC TCATTAATNA TNACCTNTAA
    NTTTNAATAG TNCTNTTTNG CNCACTANTT NTNAACCNGA NCNAANGNNN
    ANGTTGANCT ANTNACCG

AT1G22330.1

Model type
Protein coding
Short Description
RNA-binding (RRM/RBD/RNP motifs) family protein
Computational Description
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G78260.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22340.1

Model type
Protein coding
Short Description
UDP-glucosyl transferase 85A7
Computational Description
UDP-glucosyl transferase 85A7 (UGT85A7); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A2 (TAIR:AT1G22360.1); Has 7763 Blast hits to 7662 proteins in 424 species: Archae - 0; Bacteria - 289; Metazoa - 2112; Fungi - 32; Plants - 5212; Viruses - 58; Other Eukaryotes - 60 (source: NCBI BLink).
Link
InterPro Scan - TAIR