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13-5274-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 89879 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -157; Region: promoter
    Flanking Genome Sequence: 13-5274-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTGT 
    CTTAACCTCT TTTTTATTTT TTAGTCTTGG TAATAACAAG ACTAATTAAA 
    TTATTATTTT ACTTTTTTTA TTATCTACCA ACAACCAAAC CCTAGTTTTG 
    CTTACGTCCG ATCTCCTCCT TCTCTCTTTT CTTCTCTCCC AAACGTTCCC 
    TTTCTTTTTT TTCTCTAATC ACGAACCAAA AAGCATCATA ATCTCGATGA 
    GTTAAATCCA TGTATCTCAA AACCCTAATC ACCACTTAGC TAGTAAAAGG 
    AAAGGAAAAT AAAAAGGACT TGTGTGGTAG AAAAGGAAGA TGAGCAGTAG 
    CGGAAACCCT AGCAGCAGCA GCGGTGGAGG AGGAGGACCG TGCGGCGCGT 
    GCAAGTTCTT GANAAGGAAG TGTGTCGCTG GCTGCATCTT CGCTCCTTAC 
    TTTGACTCCG AGCAAGGAGC GGCGCACTTC GCGGCGGTTC ACAAGGNGTT 
    CGGAGCGAGC AACGTCTCCA AACTCCTCCA CCATGTTCCC GAGCATAAAC 
    GACCAGACGC CGTCGTTTCA ATCTGCTTTG AGGCTCAAGC TCGTCTCANA 
    GACCCTATCT ACGGCTGCGT CTCTCACATC GTCTCTCTTC AGCAACAGGT 
    TAATTATTCT TTTCATAACG TTTAATTATA TGATTAGTAC TATTTATGAT 
    GGGAAATTGC AACAGTTTTA AGTNGATCTA CTGNCTCTAT ATCGNCACGT 
    NGATCATTTT ATTTNAATCA TTTNCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 89850 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: -186; Region: promoter
    Flanking Genome Sequence: 13-5274-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGCGCTCCAT CGCGTTGCTT TGAAGTCTTT TTTTTCTTCT TCTTCTTCTT 
    GTCTCGTGTT AAGCTCTTTG CGTGAAGCAA AACATTCCAT ATCTTTCAAC 
    TTCTTCATTG TTATTCCCTT TCCTTCACTT TTTCTACTTC TGGTTTAATT 
    TTATTTTTGT TACATCGAAC CACACAACTA TCTTATGGTA TATACCAATT 
    GTAATATATG AACATTCAAT CTAATACTAT GAGAAATTAA TTTTACAAAC 
    AAATAAATGT ATAAAATAAG CT

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR