1. Home
  2. Mutant Lines
  3. 13-5282-1

13-5282-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1908021 [Map]; Strand: c
      • AT3G06290.1 - [+] show detail - SAC3/GANP/Nin1/mts3/eIF-3 p25 family
        Distance: -724; Region: promoter
      • AT3G06300.1 - [+] show detail - P4H isoform 2
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5282-1 - 3-prime edge 
    ATGAAAAGGC ATTTGTGTAT GAAGGTTTTT TGACGGACTT GGAATGTGAT 
    CATCTAATCT CTCTTGTGAG TGCGAATTTT GCTCTTTGGG TTTGAGCTCA 
    AATTTGGAAA CTTTTTGGCT TAAATGTGCT AGTTTCAGTA TCTAATTTTG 
    GTTTTTTTTT TTTGGGGNAA NGGNAAAAAA AAATNTCCAA AAATNNGGGG 
    NGGCNNNAAC CAAAANGGGN AAANGNNAAN NNNGGGGNNT NCNNCCCNCC 
    CCNGNCCNTT TNTTNNCNAA GGNAANGGGC CANTTTNANT NCGNCCCNNN 
    AAANNNNNTN NANGGGCTGN NTGGNAATGN ACNTNNNTNN NANTTNNNAN 
    CCCCCCCCCC NAAAANCCNN AAANNNNNNN GGGNATTNNG NANCCNANGG 
    GNNNNNAAAA GCNAACCCCC CNAAAANNNG GGGNAAAAAA AANTTTNAAA 
    AAANTNNANC CCAAANNTCC CCCCCCNTTT NNANCGGGCC NNAAAANTTN 
    NAAAAAANNN NNNNNAAAAG CCAAAANNTT ANAAANTNNC CCCCAAATGG 
    GGNGAATTGG GAANGGGGGT TANCNCCAAA AAGGGTTTNG GGGGNAAACC 
    AAANCAAAAA TTNCCTNNTG GTTTGGGAAA AAGNANAAAA AANAACCCTT 
    NNGGTTTTTT NGNACNAANT TGGNAAAATT AAAATTNCCN NGGGGAATNN 
    NANNCTAANG GGAAACCTNC GNGGGCNANT NCAAAATTTT AAAAATAACC 
    NCCCNGGGNG NTANCCNCCG GGGCCCTNTT

AT3G06290.1

Model type
Protein coding
Short Description
SAC3/GANP/Nin1/mts3/eIF-3 p25 family
Computational Description
SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G54380.1); Has 1557 Blast hits to 1047 proteins in 222 species: Archae - 0; Bacteria - 35; Metazoa - 487; Fungi - 321; Plants - 148; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G06300.1

Model type
Protein coding
Short Description
P4H isoform 2
Curator Summary
Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins.
Computational Description
P4H isoform 2 (AT-P4H-2); FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, procollagen-proline 4-dioxygenase activity; INVOLVED IN: peptidyl-proline hydroxylation to 4-hydroxy-L-proline; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123), Metridin-like ShK toxin (InterPro:IPR003582); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G18900.1); Has 2500 Blast hits to 2478 proteins in 341 species: Archae - 0; Bacteria - 386; Metazoa - 1038; Fungi - 78; Plants - 408; Viruses - 17; Other Eukaryotes - 573 (source: NCBI BLink).
Link
InterPro Scan - TAIR