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13-5293-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3855055 [Map]; Strand: c
      • AT5G11950.2 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 0; Region: intron1 (5UTR)
      • AT5G11950.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-5293-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACTGTTTA GTGATCGATT 
    TGTAGATTTT TATCCATTAA TGGAAGATAA TCAGCGAAGC AGATTCAGAA 
    AAATCTGTGT CTTTTGCGGA AGCCACTCTG GTCACAGAGA AGTTTTCAGT 
    GATGCTGCCA TCGAACTCGG CAATGAACTC GTTTGCTCTC TATCTCTCTT 
    CTCTTCTTCT TTTGATTGCT TCTTGTTTGG TTTTGTGATA AAAATATGAA 
    CTTTTCTTCA AATCAATACA GATATCACCT TCGCTCGGTT TTTGAATGTC 
    AAAATACGAA CTTTTTAGTT TACTTGTTCA TTTCAAACAA TGGGTTTGGT 
    GGATTTTATT TGTGCTTGCG TCTATTGTAA GCTN

AT5G11950.1

Model type
Protein coding
Short Description
Putative lysine decarboxylase family protein
Curator Summary
Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
Computational Description
Putative lysine decarboxylase family protein; FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 4835 Blast hits to 4834 proteins in 1455 species: Archae - 28; Bacteria - 3320; Metazoa - 8; Fungi - 132; Plants - 375; Viruses - 0; Other Eukaryotes - 972 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11950.2

Model type
Protein coding
Short Description
Putative lysine decarboxylase family protein
Curator Summary
Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
Computational Description
Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR