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13-5320-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26548966 [Map]; Strand: c
      • AT1G70430.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: intron17 (3UTR)
      • AT1G70440.1 - [+] show detail - similar to RCD one 3
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 13-5320-1 - 5-prime edge 
    CATAGGATAT ATATATAGAA TATAGTAGAT TGTTGATTTG TTGTAATGGA 
    ATGACTCTGG AAATCACAAC AAAAAAGTAG ACTTTTTTTT TCTTTTTGTT 
    NGTTNGTTTT TGNGTGTTAG TTGTATCAAA CCAGATTTTT ACGTTAGTAA 
    TACAAAAAGA CACTNGGTTA AAAGCCCAAT GCCCATTGCT NGCTTTTGTC 
    TCTAATGGAT TTATGTTAAA AAAAAAGANA GAGNCCCTAT ANATAANGAA 
    TNCNTAAAAN AATAATCTTC CTCCATTAAA CTTAAAAAAT GTTGTNGCTG 
    CTAATCAAAN ANCTGATCTG TNGCTCTACC TGCAAACATA TAAAANATTT 
    TANATNGANC NCTATNGNAA ANGTTTTTAT AAGTATNACT TTNACTTNTA 
    CATTTNGGTT TTACCCTTTT TACCGGANAA TTAANATNTT TNCTTCNNNG 
    AACTTCCNNT ANANGCTACG ANACCGNGGC CGGGNGACCC NNGNGGGCCC 
    TNAGNNANAN AANAAAANGN AGAGNNGGGN NNNNNGNNNN NNNNNAGNNN 
    NNGGNNANNT NAAGNNNGNN NNANNANGCN NCACNGNNAC NNNAANCANG 
    NNNCNNNNGN NNNNNNNCGC NANANGNNAA NGGANNTNAN GNNNNNNGAN 
    NNAGNGNGNT NNANNGGNCA NANANAGANG NNNNNAAANA NANGAACCNC 
    NNGNCCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26549082 [Map]; Strand: c
      • AT1G70430.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: intron17 (3UTR)
      • AT1G70440.1 - [+] show detail - similar to RCD one 3
        Distance: 0; Region: exon5 (3UTR)
    Flanking Genome Sequence: 13-5320-1 - 3-prime edge 
    ATCCTATGTG TGAAAATGTG TGTTTCTTCT TGTTTCAAAC CTACTCCATT 
    ACGTATCATC AGCTGCTGTT GAACTTTGGC TAATTCAGGT AAATCTGTAA 
    CGTCCTCTGC CAAGAAAAAA AAACAAAAGT GTGATCAATA CTCATCTGAC 
    TTATTCTACA AGTCTAAAAN AAAAAGATTC TTTTCATAAA CCTATTAATG 
    TATATATTTC ATCTTCACAA GAAAAGTATT ANACCTTGCT CTATAANAAA 
    AACATTTAAT TTTGNGTAAG TCATCTGATT ATGAAAAACA AATCTTGTTA 
    AAGTANACTT ACCCTATACA GTTTTTAACG CCTCTGATTC TTGAGTATCT 
    TGAAAAGAAN ATTGTCTCCA ACCACTTCCC TAATCTTCCT AACTAGCTGC 
    TCTCTCCTCA GTTTCCGTTT CTACNCAAAG AANCAAGANT TAAAATCAGA 
    GAGAGACAAT CACATTTACT AATGGATTTG AATAGAAATA ACTCCATACC 
    CTAAAATCAT CATAACTAGT CAAAATCAAG TTCATTCTTG TNGCGTCAAG 
    TGACTTTGAA NGAATTGGCN TANNAACAGG AAGCTAACCC ATGGGNGACC 
    TTGNTCTTCN ANTTANACCT GANCCANAAN CNCCCNAANT TNANTNGNCC 
    NCTCTNAATN ANAANNTNNG AAAAAGNNGA NNNNGGNGNN ACCNNNGAAA 
    AAAAAAAANT NNAAACCN

AT1G70430.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G14720.1); Has 112134 Blast hits to 111193 proteins in 3892 species: Archae - 129; Bacteria - 13354; Metazoa - 42048; Fungi - 11129; Plants - 27216; Viruses - 433; Other Eukaryotes - 17825 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70440.1

Model type
Protein coding
Short Description
similar to RCD one 3
Curator Summary
Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.
Computational Description
similar to RCD one 3 (SRO3); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: RST domain of plant C-terminal (InterPro:IPR022003), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: similar to RCD one 2 (TAIR:AT1G23550.1); Has 176 Blast hits to 165 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR