1. Home
  2. Mutant Lines
  3. 13-5373-1

13-5373-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3691992 [Map]; Strand: w
      • AT1G11070.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein ...
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 13-5373-1 - 5-prime edge 
    CCTGGAGGTG GTGGAGGAGG CGGAGCAAAA GATTTTGAAA CCATTTCAGA 
    TTTCACTGAA ACTTTTGAGC AATCTTTATC ATCAATCTGA CTCTTCACAC 
    TATCTTGTTT CTCAAGAATA GCTTCTTTTG CTTTCTCCTC TGTTTCACTC 
    TTCTTCACTT TGAGACTCTC ATCATCACCA TCACCATTAT TGCTCAGAGC 
    TTCTTTCTGA CTAAAATTTT GGATAGCGAG TCGCTTTACA TCGATAGGAC 
    TCAGCTTTAC AAGCGCTTGC ATTCTCACAT TTCTAGGAAG ATTTGACACA 
    GAGATTGAAA AGTCTCCATG GACTTTACTC GGTGGACTCA GCACCGTTTT 
    TGGCCTGATC GGTTGCTTCG CCAATGATTC TGATCGGTCA TTTGATGTTT 
    TAGTACTCCG CGGACTAACC TTTTTCTTCA TTTCCACATT GCCGTTCTCT 
    GTCGTATTAA GCCTCTCGTT CATCCCCTTA ATCAGTCCAT CTAATGCAGC 
    TAACACCTTT TCCACTACAA GAACAAATGC ATAGAGATNT TGGTTACAAT 
    AAATGTTGGG ATATATAATA TTTAATATTA ATATTAATCA TTAAGACTTT 
    GATATATGTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3691876 [Map]; Strand: w
      • AT1G11070.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein ...
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 13-5373-1 - 3-prime edge 
    CCTCCAGGGA ATGCAGCAAT CCCGGTGGAA CCACCACTTA CAATGTCTGC 
    TGAAAAAGAG TCGTATGCTC CGCTTCCTCC ACCTCCCGGA AGAGCAGCAC 
    TACCACCGCC ACCGCCACTT CCAATGGCTG TGAGAAAAGG AGTGGCTGCT 
    CCGCCTCTTC CACCTCCAGG GACTGCAGCA CTACCTCCAC CACCGCCACT 
    TCCAATGGCT GCCGGAAAAG GAGTGGCTGC TCCACCACCT CCTCCACCTG 
    GCGCAAGAGG AGGCTTGGGA GCGAAGAAAG TAACTAGTAA ACTGAAGAGA 
    TCAACCCATT TAGGGGCCCT ATTTAGATTC CTCAAGGGGA AATTAGAAGG 
    GAAGAATCCA GAAGTAAGAT CTCGTGGCGC TGGAGGAGGA AGTAAAGGCG 
    CGACTGGAAG CGCTCCAGCC AGCGGAAAGC AAGGAATGGC TGATGCTCTT 
    GCTGAGATAA CAAAGAAGTA AATCACATCT CACTTCACTT ATAAACAACA 
    AAATGGTCAA AACTCATACT TGCTTAATGG CTACACAGGT CTCCTTATTT 
    TCAGAAGATA GAAGAGGATG TTCGAATGTN TATGACTTCA ATTCAATGAG 
    CTTANGACAG ATATTACAAA GTTCAAGAAC AGGGACATTT ACCGAGCTTN 
    AAAAATTTTC ACCATCGNTT TTGAATCAGT TNCTTGANAA ACTNNAAGAT 
    NAAACCCAGG TTNGTGATNA CCACAT

AT1G11070.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in 152 species: Archae - 0; Bacteria - 68; Metazoa - 159; Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Link
InterPro Scan - TAIR