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13-5405-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5390985 [Map]; Strand: c
      • AT4G08480.1 - [+] show detail - mitogen-activated protein kinase kinase kinase 9
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5405-1 - 5-prime edge 
    GNGANAAACT AACAAAATCG GTTATACAGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATTCA GTATATTGGT GTTTCTGGTC CTGAAGATTT 
    TGCTATTTCT TCTGATGCTT GGAAAGCTCG TATGGAGCAT GAGCGTTCTT 
    CTTCAGATGT TGTTAATAAG TTAAAGTCTC TTGATCTTGA TAGTCGTGAA 
    GCAGGTCCTA GTGGTGGTGT TGTTGCTTCT AGTTCAATGA ATCATAAGTT 
    TCAGGGTCAT GATTTGAGTG AAGCAGGTTC TATTGGTGTT GTTGTTGCTT 
    NTAATTTTAC GCTTTCTGAG TCGAATAAGA TTGAGAACTT AAATAGTTTG 
    AGGGATAAGG AAATTGTTGA TGGTGATATG GTANANAATA GGTGCGGTNT 
    TGAGCGAAAA CCGACTATTT TGGTGAAGTC GAGAGGGTAT CTTGTTCACA 
    ATGATGATGT GGGTGTTGGT GGTGGAANTA AGGGAGTNAN ACCACCAGGG 
    CTAACTTNCC TAGCCAANCN AANGAATNTG NGAANGTGGA NCCGTGGANA 
    ANAANANTGG GATTGANNCC CCACNAACAN AAATNGGGAA GGNAAAGGGG 
    NNTCTTCTTG CNNAGAANNC CNANTNGNGG GGGANNANCA NCNNTNCTAA 
    NTNNNNNCCC NCCACNNNAN NAANATANNN CANNNCCNCC CNTTTANNAN 
    TTNNNNNNNT NGGNGGNNNN NANNNNANNN NTNNNNNANN AAANAAAANA 
    AANACCCCCC CCCCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5426228 [Map]; Strand: c
      • AT4G08530.1 - [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfa...
        Distance: 3872; Region: intergenic
      • AT4G08540.1 - [+] show detail - DNA-directed RNA polymerase II protein
        Distance: -7417; Region: intergenic
    Flanking Genome Sequence: 13-5405-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CTATATTAGA GTTACTTGCG AGAAAGTGTT GCTTGATAGA GCATCTGTTC 
    TTAGATAACT GTAATCAAGG TAAAACTTAC TTTTGTGTCT GGTTGATTTT 
    GATTTTAGGC ATGATAACAT ATCCAACCAT CAAATTGTTT GTGACCAACT 
    GCCTCAAGAT AACTTCTCTA ACACTCCTAG ATTTTAGGCT AAATGACGCA 
    ATGGCCCAAA TCCTTGTTAC GGTAGGGCTC TTCCTCCTTT ATGTCTTCTC 
    ACTTTATTTA ATAAATGTAT ATATAAGCT

AT4G08480.1

Model type
Protein coding
Short Description
mitogen-activated protein kinase kinase kinase 9
Curator Summary
Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K). This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9), At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19). Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301.
Computational Description
mitogen-activated protein kinase kinase kinase 9 (MAPKKK9); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAPK/ERK kinase kinase 1 (TAIR:AT4G08500.1); Has 126354 Blast hits to 124684 proteins in 3992 species: Archae - 124; Bacteria - 13458; Metazoa - 47584; Fungi - 12553; Plants - 31595; Viruses - 535; Other Eukaryotes - 20505 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G08530.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, petal, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); Has 27 Blast hits to 27 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G08540.1

Model type
Protein coding
Short Description
DNA-directed RNA polymerase II protein
Computational Description
DNA-directed RNA polymerase II protein; BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II protein (TAIR:AT1G77890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR