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13-5414-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12014204 [Map]; Strand: c
      • AT2G28180.1 - [+] show detail - Cation/hydrogen exchanger family protein
        Distance: -314; Region: promoter
      • AT2G28190.1 - [+] show detail - copper/zinc superoxide dismutase 2
        Distance: -294; Region: promoter
    Flanking Genome Sequence: 13-5414-1 - 5-prime edge 
    CTTTANAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCA CTATCTAGAA ATAGTTTCCT ATCTTATGTG 
    TGACCAAAGC TGTTTTCATT CATAGAAAGA CAGTCATCTT ATTTAAAGAA 
    ATTCCTTTTT TTCTGGTAGA TTCTTAGTTG ACTTCTTTCT GTGGTTTATA 
    ACNTTATAAG AAGCTGAAGA CATATACTAT TTATAGTGGA GAAACAACTC 
    AAAAAGGGTC TAAAACTACA TATGTCTATA GATGTCCAAA GTGTGTTTTT 
    TAAAAACAGC ATAACCTATA AACAGCATAT ACATCTGTGT GTCATTTGTT 
    TACAAATTGT TTCTTTGTTA TCAAAAGGAA CACAACATTT ATTTTGTTAT 
    CGTCTTCCCC ATTTTGACAA GAACTCACTT AAGATTTTGA AGTCATGGAA 
    ATGGGGAACG GGACAGGACC CGGGATGTCG GGGGCTTTTA GTGGAGGCGG 
    CAACGAGATT TTGGGAATGG GAGGTGGCGG CGGCATAATG GGAGGCGGTG 
    ATATTTCACA TATGAGTCCT GAAGTAAAAT GGATATTTGA GATGGCTTGG 
    TATGGTGAAA CTGTAAGATA TGATGGGTTA ATTTGTGAGG AGCATCCCCC 
    TAAGCTCTCT TCANATGGTA TTTGGGAGAA ACTTATTATT AAATCGGCAG 
    GTCTATATTT TTGGCATATC GNCTTCCGAA NCTCGAAATN GTNATCTTGC 
    TCNCTNNTTC TTTGNCAANG CTTAAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12014208 [Map]; Strand: c
      • AT2G28180.1 - [+] show detail - Cation/hydrogen exchanger family protein
        Distance: -318; Region: promoter
      • AT2G28190.1 - [+] show detail - copper/zinc superoxide dismutase 2
        Distance: -290; Region: promoter
    Flanking Genome Sequence: 13-5414-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TTTCATGCCA AGTTTGTCAC TAAATTGGTC AAAATATATT GGCAAGTTTA 
    ACATTTTCGC ATAAGATAAT AACATATACT TATATTTTTT TAAGAACTAA 
    TTTGCCAATC AAAACTAGCA ATAAAGTGAA GAAAAAAAGT CTAATAAAGT 
    GTAGAAATTA ATCAAATTTT AAGTCCTAAA GTTGGAAAAA TGGTAAAGAA 
    GCACTCAAAA AAAAAAAAAA AAANTNGGNT TTNGGGGGNC CNNTTTTNAA 
    AACCCNGGGC CCCCAAAAAA ACCCNNTTTT TTNANNNCCC CNNAANTTTT 
    GGGCCCCCCN TTTTNCCCCN AANCNTAAAA NNNNNCNNNG NTNNGGGGNN 
    CCCCCNNNNN AACCCCNGNT TTNNANTNCC NTTNNGGTTT TTNANTNCCC 
    CCTNCCCCNA ANCNTNAAAN TTNNNGNNCN TTTTNCNGGG GGGTTTTTTT 
    AAAAAAAAAA ANTTNCCCCN GNNNCNANTT NNTTNCNTTC CCCNNAAAAC 
    CCCCNCAAAA NNNNTNANNN NTTTTTCCCC NGNAAAAAAN GGNNNNNCCN 
    GNCNTNAAGG GNCCNTTNNN NGGAAAGGGG NNNNTTTTTT TGCCCCAAAA 
    AAACCGGGGG CCNNTTTTTT AANNGGCCNA AAATCTTNAT TTTTNCNNNG 
    GGNTTTTANA AAATNNTTTN GGGGGGCAAN ANNGGGCCCC CCCCGGGGGN 
    AAACNNGNGN NNNNTNNNAN NNNTAANTT

AT2G28180.1

Model type
Protein coding
Short Description
Cation/hydrogen exchanger family protein
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
ATCHX8; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 6A (TAIR:AT1G08140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G28190.1

Model type
Protein coding
Short Description
copper/zinc superoxide dismutase 2
Curator Summary
Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Its expression is affected by miR398-directed mRNA cleavage.
Computational Description
copper/zinc superoxide dismutase 2 (CSD2); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Superoxide dismutase, copper/zinc, binding site (InterPro:IPR018152), Superoxide dismutase, copper/zinc binding (InterPro:IPR001424); BEST Arabidopsis thaliana protein match is: copper/zinc superoxide dismutase 1 (TAIR:AT1G08830.2); Has 4720 Blast hits to 4704 proteins in 1488 species: Archae - 6; Bacteria - 1989; Metazoa - 1257; Fungi - 323; Plants - 669; Viruses - 141; Other Eukaryotes - 335 (source: NCBI BLink).
Link
InterPro Scan - TAIR