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Mutant Lines
13-5419-1

13-5419-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 82138 [Map]; Strand: c
- AT4G00190.1 - [+] show detail - pectin methylesterase 38
  Distance: -98; Region: promoter

GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCCA TGATTCATAT TATATGTTAC CTTAGTGAAA 
CATCAAACGA TGAAACGTGG AGTAATTGTA AAATGTTTCA TGTTATTTCT 
GATAACTGAT GTTTCCTCAA TGGTTTTCGG AAATGAAATG TGCGATGAAA 
CGCCGCACCC GGGTGAATGC AAGACTCTAC TGATCAAACA CAAACCCATA 
AGAAGCACTA CACAGTTCCT GCAAGTGTCC GTGGAACGAA CATTAGATGG 
GGCTGTCAAA GCCAAGAGTG ACACGTATTT TCTTGAGCCA CAATTTGGTT 
CAAAGCAAGC T

AT4G00190.1

Model type: Protein coding
Short Description: pectin methylesterase 38
Computational Description: pectin methylesterase 38 (PME38); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, synergid; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT2G45220.1); Has 2963 Blast hits to 2921 proteins in 467 species: Archae - 10; Bacteria - 871; Metazoa - 1; Fungi - 198; Plants - 1837; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link: InterPro Scan - TAIR