1. Home
  2. Mutant Lines
  3. 13-5420-1

13-5420-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11585353 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 4806; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 1163; Region: intergenic
    Flanking Genome Sequence: 13-5420-1 - 3-prime edge 
    NTTANACNNA NGNCAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT 
    CCCTNCTTCC ACAAATAAAC CGTCAACGAA TATTCAAATT TCAAAATTCA 
    TTTCTAATTT CTTCAAAACG AGTTTGAATT TGAGTGGAGA AGCAGATTTT 
    GTTCGTCTAT CTTCTTCTGA ATCTTTTCTC CGATCAATTG AATTTCATGT 
    TCAATGGCGT CTGATTCGTT GGGCTAGTTC AAATCGGAAT CCAAGGGTTT 
    CGATTTTGGG TCGGTGATAA TCCAACGATG GATACACGGA TTGGATTTGG 
    ATCGTGTGAT ANTACTACCA AATTGAAGAA GGTGCGCAAG ATTTCGATCA 
    GTGTGTATGT TGATTTGGGA ATTTAGGGTT TTAGTTTTGA AATTGNTTGC 
    TTGATTTCTG TTGGAATTTA GTTTGTTTTT GATGGTTATG AGATCTACCA 
    NTTAGGATAA TCNCGTACAT GGATTTATAA AGAGTGATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 11585359 [Map]; Strand: w
      • AT1G32172.1 - [+] show detail - other RNA
        Distance: 4812; Region: intergenic
      • AT1G32180.1 - [+] show detail - cellulose synthase-like D6
        Distance: 1157; Region: intergenic
    Flanking Genome Sequence: 13-5420-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT TACGTTGCGA AAATCAGCTA TTTATGTGAT 
    TCTTCGACAC AAAGAACACG TAGATTTACA GATTATGCCC TTATGCGTAT 
    ATGCTCGAAC GGTATTATTT TCAAAATTGT GTTTCCCGCT TTGGAGATAT 
    TTAGTTAGAA TCCCATTAAA AACTTTGGAG ATAATAGGTT CAATTTGTTC 
    TTAAAAACTA GAGTTGAAGA TGAACCCTTC TTTTAATTAG TAGCAAATTA 
    TCATCTGCTT GCTCTATCTT TTTTTTTTNC CNTTNAATTA GNAAATNTCC 
    AANCTTNGTT NNTTNAGTTC CCATTTTTTN NCATNCANTT TTNTTTTTNC 
    AATNTAANTT NGGGAANTTT TNCAAAANTT TTTNGAAAAN TCAANTTAAA 
    NANANANANA ANTAANNCNC ANNAATNTNT TTNGTNNAAA ACAAAAAAAA 
    AAAANATGGG NGGANAAAAA ANCCAANTNG TNNANCGCTT TTTANGGNAN 
    CAANCNCCCA AAAAAANCCA AAAGGGNGGG NGNNTTTANT TTTTTTCGGG 
    GGNGNNTTNN GNTCCCTTTT AAAAANNANG GGGGNGNNGC NAAANGTAAA 
    NGAAATCCTT CCNCTGGNAA AANNTGGGCC GGGGGNAAAN AGNNTTATTT 
    TGGGGCNTAN GGGGCCCNAA AANAAANCTT TTTCCCTTTA ANGGGGGAAA 
    NTNAAATTTT GCTTTAN

AT1G32172.1

Model type
Other RNA
Short Description
other RNA
Link
InterPro Scan - TAIR

AT1G32180.1

Model type
Protein coding
Short Description
cellulose synthase-like D6
Curator Summary
encodes a gene similar to cellulose synthase
Computational Description
cellulose synthase-like D6 (CSLD6); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose-synthase like D2 (TAIR:AT5G16910.1); Has 3332 Blast hits to 2680 proteins in 615 species: Archae - 13; Bacteria - 1453; Metazoa - 5; Fungi - 21; Plants - 1756; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Link
InterPro Scan - TAIR