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13-5446-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Flowering & Growth::late flowering)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1711599 [Map]; Strand: w
      • AT1G05700.1 - [+] show detail - Leucine-rich repeat transmembrane protein kinase protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-5446-1 - 5-prime edge
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAA TTTTCCCATC CTACTTTCGT TACCGACCGT TACCGAACTC
    CGGCGGAGTT CCTCTCAAAA CTGAAGTTCT TGAGGGTTTT GTAAGTTCTG
    GACATATCTT AACAAATGAG ATCGATAATT ATGGACTCTT AACTCTTAAC
    AACATCTGCA NNANTNTAAA AAATANCACT CTTACCGGCA CNNNCCCATC
    CGANTTNTNN NAANGATNNN ACACCGGNTN ATTCTCGCTA AGGCTAGGAG
    AAAANCCNGG ACTCTGTACT GAGATGNNTT GCNNAAAAAG CAACAGCAAA
    NAACTCGCNA TCCCGCTTGT CNCATCATTT GCAGCATTGN NCATCCTCTT
    GTTATTGNCT GGTGTGTTTT GGAGAATCAG AAACCGGAGA AACAAGTCCG
    GTACANTGAC AAATNTATCN CTATATCTTT CCTTTTACAT GCATATCTAT
    CTGGTAATCA CATTACCANT TGTTAAAACT TTCTTTTGCA AAGTAAACTC
    CGCACCTCAN ACCANTCCAA TGGCGAAATC GGAGAACAAA TTACTGTTTA
    CCTTTGCAGA CGTTATAAAG ATGACAAATA ACTTCGGTCA AGTCCTCGGC
    AAAGGAGGGT TTGGAACAGT CTACCATGGC TTCTATGACA ACCTTCAAGT
    AGCTGTTAAA CTTTTATCAN AAACATCANC TCAAGGATTC AAANAGTTTC
    NCTCTGAGGT ATTGNANNAN AACT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1711602 [Map]; Strand: w
      • AT1G05700.1 - [+] show detail - Leucine-rich repeat transmembrane protein kinase protein
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-5446-1 - 3-prime edge
    ATGAAAACGG TAGGAGTTAC TCCGGNATGT CTCCGGTTAA GCCATTGTTT 
    GATAAGTCTC TGATAATAGA GTTGTCTTGT TCAAGTCAGA AAAAACTCTT
    TAACAAAATA CAAAATTATA GGTATCATCA GAATCTTGAA TTAGGTAAAC
    TCACAGCCTC TTGAATCATT GTGAGGTTAG AGAAGGAGGA AGATATATGA
    CCCGTTAACC CGCTTGATGA TAAGTTCCTG CCTCCAATAG TGTAAATTTT
    TTTCCTACTC AATATAGAAA ATCCACCGAC TGATCAAGAA GCGATTAAAA
    TTAGACTACA CCTTACAGTG ATGTGATTCT TGGAGGAGTA AGACTATCAT
    AACTGCAATT AAGGCCCTCC CAAATGTAGT CATTAGGCAA ACAAGGATCT
    CCGTGCCAGT TCTTCTTCAC TTTATAACTC GTCTTTAGAC TCGTAACCGC
    GTCACCTGTA AGTTTCAATT GAATGCATTG ATCAAACTGA GAAAAAAGAT
    TGAACTTTGC TAGTCATGTT ATACTAGCAC AGACCATCCT CTTGGTTAGT
    GAGAGACTGC GAGAAACTAT TTGCGACGTA GATCTCTAGA GCGTTAACAA
    TTGGCGGAAG AGTGGACTTT GGGGTTCGAA CGAGTGAAAA CGCAATTTTC
    GATTGGCTCT CANGGTTTAG AAAAAACGTG TTTGTCTGAA GATACTTGGG
    GCTGAATCCA GCAGCAACTG TCACTCCGTT AATGCTGATG TCGAACTCTC
    TTGTCTGGTT CGGTTTGAGA CTAAAA

AT1G05700.1

Model type
Protein coding
Short Description
Leucine-rich repeat transmembrane protein kinase protein
Computational Description
Leucine-rich repeat transmembrane protein kinase protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, stem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase protein (TAIR:AT4G29990.1); Has 163331 Blast hits to 124125 proteins in 4749 species: Archae - 121; Bacteria - 14440; Metazoa - 44652; Fungi - 9862; Plants - 74464; Viruses - 498; Other Eukaryotes - 19294 (source: NCBI BLink).
Link
InterPro Scan - TAIR