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Mutant Lines
13-5475-1

13-5475-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 1; Position: 28363544 [Map]; Strand: w
- AT1G75530.1 - [+] show detail - Forkhead-associated (FHA) domain-containing protein
  Distance: 1729; Region: intergenic
- AT1G75540.1 - [+] show detail - salt tolerance homolog2
  Distance: -2483; Region: intergenic

CCAATGGGAT AGTTGTTAAC TTCTATCAAC GTGAAATTAT TTTGACACAA 
ATATTATTTG GTTTCACTAA ATTTGTTTAA TTTCAATAAT ATTGTGGGAG 
TAGATGACCT AGAGTAGGAG TTTAAGTGTG GAGCTTCGAA CAACGTACGA 
GAGACACGGC GGACCAAACG AGCCACGTGT TGTCTCTCTT CTTTGCCCAT 
CCCTTCTTCT ACCTTCTTTG AACGTCAAAT TCTTATAGGT TGAAATTTAG 
TTTCAATGTT CAAAACAGAA AATAATGAAT TAAGAACATA ATCCAGCCTA 
CCAGAAATAA TATCAAAACA AATTTGCCGT TCATATTAAA ATGTTTTTCG 
CCATGATTAT CCACTTGATA AAATGTAGTA CATGAGATGA GACTATGAAG 
NGGGACCCGT CTGCTCCCTA GCTCACATCA AAAGTTATAA CTATTCTACT 
AAAGTAATCT TGCGTTANAC GCTGTTCACA TGGATGCTGT ATTATGCGCT 
CAAATATTAN TATCGAATTT ANGTNAAANG AACTGGTCTA AAAAAGCTTC 
CACACTGCTG NACTGGAATN CTCGAATTTG AAAATATCTT TGNAGTNAAA 
NATTGTNAAA TTACTGATTG GGCACCATGT GTGCTTTANT NTNNGGGNTT 
GGAAAANAAA AANNNCCCAT NAACTNNNAC CNNANTNAAN ATNTAACGAC 
CGTNAGAACC NGGNGGAGAN NTAANGAAT

3 prime edge [+] show sequence

Chromosome: 1; Position: 26425479 [Map]; Strand: c
- AT1G70180.2 - [+] show detail - Sterile alpha motif (SAM) domain-containing protein
  Distance: -862; Region: promoter
- AT1G70180.1 - [+] show detail - Sterile alpha motif (SAM) domain-containing protein
  Distance: -979; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCACTCA 
TCAATCATCC ACTGGAAATT TCAAAGAATA TAATGACCTT AGTAGTCTAG 
TTGAAGAGTC TCCATCGATT CAGCTCTGTT TCATCACCTA TGTGCTTGAA 
TCTGTTGAGA GTGATCTTAG TGCAGGCAAC AAGTTAACAA TTGTTCATCA 
CTTTAGGATC TATTACCTTC AATTCTCTAT TATCGTCTAA AAAAACTCTG 
TTTTATATTG GAGATAATTC TCTTGGATTT TTTGATATTT TTCCCTCGTA 
TGATTGCAAA TTAGAACTTT GACTCTCTTC TTGGACAAAC GGGATGGATC

AT1G70180.1

Model type: Protein coding
Short Description: Sterile alpha motif (SAM) domain-containing protein
Computational Description: Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G07170.1); Has 6230 Blast hits to 4024 proteins in 371 species: Archae - 0; Bacteria - 343; Metazoa - 2415; Fungi - 962; Plants - 639; Viruses - 147; Other Eukaryotes - 1724 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G70180.2

Model type: Protein coding
Short Description: Sterile alpha motif (SAM) domain-containing protein
Computational Description: Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif-type (InterPro:IPR013761), Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 1 (InterPro:IPR021129); BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT3G07170.1); Has 6486 Blast hits to 4294 proteins in 377 species: Archae - 0; Bacteria - 358; Metazoa - 2617; Fungi - 961; Plants - 670; Viruses - 147; Other Eukaryotes - 1733 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G75530.1

Model type: Protein coding
Short Description: Forkhead-associated (FHA) domain-containing protein
Computational Description: Forkhead-associated (FHA) domain-containing protein ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT3G54350.3); Has 370 Blast hits to 247 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 217; Fungi - 16; Plants - 96; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G75540.1

Model type: Protein coding
Short Description: salt tolerance homolog2
Computational Description: salt tolerance homolog2 (STH2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT4G39070.1); Has 3177 Blast hits to 2249 proteins in 137 species: Archae - 0; Bacteria - 0; Metazoa - 20; Fungi - 43; Plants - 2068; Viruses - 0; Other Eukaryotes - 1046 (source: NCBI BLink).
Link: InterPro Scan - TAIR