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Mutant Lines
13-5489-1

13-5489-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17861147 [Map]; Strand: c
- AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: 0; Region: exon1 (CDS)
- AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
  Distance: -376; Region: promoter

GATGCAGCTC TCTTCGCGTT TTCAAACAGA TACAGACTCA ATTGATTACT 
CGTGATCTTC TTCGTGATGA CTTAATCATC AACAAAGTCG TGACCTTTCT 
GGGCAAATCC GCAGATTTTG CATCTTACAG CTCTGTAATT CTCCACAGTA 
TCCGTTCTGT GTTGAGCTCT TTCTCATACA ACACGCTTTT ATCAAGCTAT 
GCAGTTTGTG ATAAACCAAG AGTGACGATT TTTGCTTACA AAACATTTGT 
GAGTAATGGG TTTTCACCGG ACATGTTCAC GTTTCCTCCA GTTTTTAAGG 
CTTGTGGGAA GTTTTCAGGG ATCAGAGAAG GGAAACAGAT TCATGGAATT 
GTTACGAAGA TGGGTTTTTA CGATGATATC TATGTGCAAA ACTCGCTTGT 
TCATTTTTAT GGTGTGTGTG GAGAATCAAG GAATGCATGT AAAGTGTTCG 
GTGAAATGCC TGTGAGAGAT GTTGTTTCGT GGACTGGGAT TATAACTGGT 
TTCACGAGGA CTGGGTTGTA TAAGGAAGCT ACCANCCCGG GCCGNNNACC 
ACCCGGNCCC TANA

3 prime edge [+] show sequence

Chromosome: 4; Position: 17861263 [Map]; Strand: c
- AT4G38010.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: -2; Region: promoter
- AT4G38020.1 - [+] show detail - tRNA/rRNA methyltransferase (SpoU) family protein
  Distance: -260; Region: promoter

GCTGCATCGG CTGATCAATT CCAGAAGAAC TGATTTCTCC GGCAAATACA 
TCTAGTCGCA AATAGTGATC AAACAATCAC ATGGGGGTTC TATGTTAATC 
TGCATTTGTA GAACGAGTTC GATTCACAGA AAGAACCAAA TTTGCAGATT 
CATAGACNGG AGAAGAAGCG GAAGACTGAA ACAGAGAGCT AACCTGAGGA 
TGACGAAGAG GGTTTACCGT TAAAACCACT TATTGGGCCT ATTATTGGGC 
CTATCTTTTT AACAGATTGG GCTTTTCTAT AAAATTCTTA GACCTCTCTA 
GACTCTAGGC TTCACCGGAG AAAGAAGAGA AATCAATCGG ATTAGTTGCA 
GAAGTGCAAT GCATTGCGGA TGTGTATTCG CTTCACAAAC TGTGTCATCA 
CTTCTCCCAT TTGAAATTAA AACCTATGCG TCAAAGCT

AT4G38010.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: SLOW GROWTH 1 (TAIR:AT2G22410.1); Has 36420 Blast hits to 13424 proteins in 196 species: Archae - 0; Bacteria - 4; Metazoa - 28; Fungi - 56; Plants - 35898; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38020.1

Model type: Protein coding
Short Description: tRNA/rRNA methyltransferase (SpoU) family protein
Computational Description: tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 12174 Blast hits to 12170 proteins in 2688 species: Archae - 7; Bacteria - 9680; Metazoa - 153; Fungi - 96; Plants - 106; Viruses - 0; Other Eukaryotes - 2132 (source: NCBI BLink).
Link: InterPro Scan - TAIR