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13-5500-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3729087 [Map]; Strand: w
      • AT1G11145.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -921; Region: promoter
      • AT1G11150.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-5500-1 - 5-prime edge 
    CGTACGCAGG CCGCCTTACT CTCATCAAAT CAGTACTTGT AAGTATCACC 
    AACTTCTGGA TATCTGCTTA TCGATTACCA AACAGTTGTT TAAAGGAAAT 
    TGAGAAGATT TGTGCNGGCT TTTCTGTGGT CTGGACCGGA TCTTAATCCC 
    AACAGAGCTA AGATTGCTTG GACCGAGATT TGTAAGCCAA TAAATGAGGG 
    AGGGCTGGGA ATTAAATCAC TAGTAGAGGC AAACAAGGTT AGTTGTTTGA 
    AATTGGTATG GAGGATACTA TCCAAATCAG AGTCTTTGTG GGTTACTTGG 
    ATATGGAAAT ATCTCATACG AAAAGGGTCA TTCTGGTTGG TTAAAGAGAG 
    CTCCAATATG GGTTCTTGGA TGTGGAAAAA GCTATTCAAA TATAGAGATT 
    GTGCCAAGAC TATGCACAAG GTGGAAATTA AGAGTGGCAG CTCAACCTCT 
    TTTTGGTTTG ATAATTGGTC ACAGTTGGGC AGATTGATCG ATATAACAGG 
    TCCTCGTGGA GTCATTGATT TGGGTATTCC TCTCGATGCA ATGGGTTGAA 
    ANAGCTCTAC ATCCTCGACG GNGTCNAAAG CATCGNAGTT GACGTTCTCA 
    ACAAAATTGA AAGCTGANAT ACATACTACT CGCCACGGAT CNCCAAGCCC 
    GGGCCCGTNN ACCACNCNNG NNCCCTNNAN AGANNNANAA NNAGNNNNAG 
    ANAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3728971 [Map]; Strand: w
      • AT1G11145.1 - [+] show detail - Protein of unknown function (DUF674)
        Distance: -805; Region: promoter
      • AT1G11150.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-5500-1 - 3-prime edge 
    TGCGTACGAT AGTGCTCTTG CAGTCCATGA GCTGATTTTT GATCTAACCT 
    TTTCTTTTTA TTATTCTTCT TATCTTTCTT CTCTTTCTCT TTCTTTGTGT 
    TGATGATGCA ATCACCACTC GATTCTCTGC CTCCTCCATC AATAATAGTA 
    TTGCCTCTAT CTCTCTCTCT GCTGAGCAAA TATTTATATC TCAAAGGGAT 
    AAAAGGAACA AAATCAAGCA TTTAAGGGGG TGTATTCAAT CTTATATTTT 
    GAGTGATTTG AGGTAAATTG AGTTTTTCTA TGTTTTTATG ATTTTGGGTG 
    GATTTAAGGA AACCATTCAA AACCACAATG CCACCTAAAG CCATAAGATT 
    TAAAAATCTC TTACAATCAT TATAAATCTA ATCCTTAAGT TTTCAAGGAC 
    ATGAAAATTT TGAGTAGATT TTCAAGCTAC CANCCCGGGC CGNNNACCAC 
    GCGTGNCCTA NA

AT1G11145.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF674)
Computational Description
Protein of unknown function (DUF674); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF674 (InterPro:IPR007750); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF674) (TAIR:AT5G01150.1); Has 48 Blast hits to 48 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11150.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative AP endonuclease/reverse transcriptase, blastp match of 30% identity and 3.2e-59 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus}
Link
InterPro Scan - TAIR