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13-5506-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30132152 [Map]; Strand: w
      • AT1G80090.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: 212; Region: intergenic
      • AT1G80100.1 - [+] show detail - histidine phosphotransfer protein 6
        Distance: -1574; Region: intergenic
    Flanking Genome Sequence: 13-5506-1 - 3-prime edge 
    ATTAATCACT ACCCTCTNAG TATTTCATAA TTTCTATGAT TGCTTTGTTT 
    TCTTTTATTA TCCATGTACA ATATTTTTTC CTTAATGGGA TTATTCCATG 
    TGCAATTTTG TTAACATGTT TATTTGTGTT TATAAGATAT TCTTTTGGTA 
    GAAATTCGTC ATTCCTTTGC TTTGACATTT TTTCTATTTA TATCATTTCC 
    CTATATTTTT CTTATGTGTT ACGTAAATGT GATGTTAACA TTCGATATGA 
    TGAGTCATTG AGATGAAAAA CGCAAAATTG TGTAAATTTT CTCTAAGAAA 
    CAAATAAAAG AAAATTTGAG TAATTGGAGA GAAGACTGAA AGTTGCGAGT 
    TAAAACAGAT CCGGAGCTCC GGAAAGCAAA GCGGATCGGA CCACAGCGAT 
    GATGTCAGTA AGAGAAACAA GGCCTTGTAG CCCACCGTTC TGGTCCACGA 
    CCCAAACTCT GTGTACACGT TTCNTGGTGA CCATTANGGN TCACGCTGGG 
    CCAAGGTGGA TGTCACGTGA CANGGNNACG AGCTCCCNTC CCTGGGTGTT 
    GAGGNANCAG CGGNGAACAA GAGAGGTCTT GGGATNTGNN CGACGGAGCT 
    NTNGTGGCNN TNNAGCGGGC NNCCCNGANC GNCNGGGTGG NTAAGTGNCA 
    NNNCCTTNNG ATCNCTNGGC NNNAAATGNT CCGACCANTC TTCGNNGGNT 
    TNCCCGNGGN ACCNANANNN AN

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30132266 [Map]; Strand: w
      • AT1G80090.1 - [+] show detail - Cystathionine beta-synthase (CBS) family protein
        Distance: 326; Region: intergenic
      • AT1G80100.1 - [+] show detail - histidine phosphotransfer protein 6
        Distance: -1460; Region: intergenic
    Flanking Genome Sequence: 13-5506-1 - 5-prime edge 
    TGATTAATGA ATAGGGTACT CGAGCACGGG GCGCAAAGAA GCATGACATA 
    CGAATGAGAC CANCCCGNGC CGTCGANCAC AGCGTGCCCA TATATCATAA 
    TTTAATCACT AGTTTTAATT GGTAACATAA CCTTAAAAAA GCATCCACTC 
    ATTATGCGCT CCACTTTACT ACTTACTCTG ATAACATGAA AAAGTATATG 
    TTTAATACTA GCTAGTTGTT TGTTCCGTTT CCAAGCACGC TCTTTCTTCT 
    TTTCAGTCAT TTTTAATCCG CATTTACAAT AATATTTAGC TATTTTCATA 
    TATCATTCTA TACTAGCTCA CAATAATTAC ATATGAGCAC GCTTTTTTGT 
    GTTCAAATAT TATAAATCTT CGTTAGTTAC CGCTGCTTTT TATAATTATG 
    TATACTTTCT GGTTCCAGGA GACTAATTAA GGAAGATTAT TAGAGGCTTN

AT1G80090.1

Model type
Protein coding
Short Description
Cystathionine beta-synthase (CBS) family protein
Computational Description
Cystathionine beta-synthase (CBS) family protein; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) protein (TAIR:AT1G15330.1); Has 517 Blast hits to 517 proteins in 144 species: Archae - 0; Bacteria - 47; Metazoa - 83; Fungi - 146; Plants - 195; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80100.1

Model type
Protein coding
Short Description
histidine phosphotransfer protein 6
Curator Summary
AHP6 lacks the conserved histidine residue (Asn83 in AHP6b), which is required for phosphotransfer, present in the other AHPs. AHP6 does not appear to have phosphotransfer activity. Acts as an inhibitor of cytokinin signaling by interacting with the phosphorelay machinery. Expressed in developing protoxylem and associated pericycle cell files. Negative regulator of cytokinin signaling. Expression is down-regulated by cytokinins. There are two alternatively spliced genes for this locus, AHP6a and AHP6b, differing in the length of the first exon. In ahp6-2 seedlings, only the AHP6a transcript is present. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).
Computational Description
histidine phosphotransfer protein 6 (HP6); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransfer factor 5 (TAIR:AT1G03430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR