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13-5511-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21335298 [Map]; Strand: c
      • AT5G52570.1 - [+] show detail - beta-carotene hydroxylase 2
        Distance: 0; Region: intron5 (CDS)
      • AT5G52570.2 - [+] show detail - beta-carotene hydroxylase 2
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 13-5511-1 - 5-prime edge 
    TGCACAAGAG ATTCCCTGTA GGTCCCATTG CCAACGTTCC TTACCTTCGA 
    AAGGTCGCCG CCGCTCACCA GGTTTTAATA CCATCGTTAA CCAACGCTCT 
    TAACAGTTCT TCATTCCATA TAGTTATTAT TGATTTACAA AATTTTGCTA 
    ACGATTATGG CTTTATCTTT TTAGCTACAC CACACAGACA AATTCAAAGG 
    TGTACCATAT GGGCTGTTTC TTGGACCAAA GGCAAGAATA TATAACCCTT 
    TTCAAAAATA AACATATGAG ATATCAATTG ATAATTTGCA TGTTATTTTT 
    GTTTAACACG TGAATTGATT TTTATTTTTT GTTTGCATAT GGTTTGGATT 
    GGATTTTGAG AATGGTGCAG GAAGTAGAAG AAGTGGGAGG AAAAGAAGAG 
    TTGGAGAAAG AGATAAGCCG GAGAATCAAA TTATACAACA AGGGTTCTTC 
    TACCTCTTAA TTGCTACAAA CCCAATTTTA CTTCTTTGAT GTTTTTGTAA 
    TACATTTTGG GACTAGTCTT TCTTTTAGTA TATATAAAAA ATGACGTANA 
    AGAAAGAGTC AGGCTAATAA AGATTTANAA AAACATAAAG AAACAATATA 
    TTCGGGTTTT GTTGAAAAAC AAAGAAAAGG AAGTGTTTCG TTGGAAACAA 
    AACGAANGAA AGAATTANCC TCTCCATTAN AAGGACAAAN TNANNGGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21887388 [Map]; Strand: w
      • AT5G53902.1 - [+] show detail - U3B; snoRNA
        Distance: -578; Region: promoter
    Flanking Genome Sequence: 13-5511-1 - 3-prime edge 
    AGACCTAGGA AAGCTGCGTT GTTGCCTTGT TGGTAATAAA CACAAAGCGT 
    CTCTGAAAAC CATGTCTCCT CTTGCTGTTT ACGTATCCAT TTTGCATCTA 
    ATTTACACGT CAACCATTTG TTATAATATT GAATACTTTT AATTTGTTCA 
    CTATTTCCTC ACTTTTACAA AAGAAACTAC ATTGGTAACA CAAAATGTGA 
    CCAGTAGTAG TAGGTGTACT TGAAACACAA ATATGCGTTC ATTGTTGATT 
    ATTGAAACAC TATCACTAGG TTACCTCTCT ATATAGTTAC TGCTTCTTCC 
    TAGCTTGCTT TTTCTTTAGG AAAAGTATTC AATTTGAAAA CAAATCAAAG 
    TTCGTAATCT AGAATAAAGG ATAATTTGTA AAATTGAAAA TTGAAGTCAA 
    AAGTGATATT TACGATTATT GCGGCTTTAT AAAACAATAA TAGGTACTCA 
    CAGTTAGATG CAGCGAATTA GTTCACAATG GGTCATTACA CTATTGATTA 
    ATTATATATT TAGGTCTAAG AATTGTTTTT TTACGACTGA GGTCTCTGTC 
    TGAGTCTGAC CGTCTGANAA TTAANACTTG CTTTATCAAC TTTGAGACTA 
    AATAAACAAA TATATGCNGA AAAACNNNCN NTNNNATNCN AATCANGACC 
    CCCCCCTNGG TCNNNNAANA NANGNTANAT NCATCCNNGN TTGAACCNGN 
    NAATGNGGGA NCCC

AT5G52570.1

Model type
Protein coding
Short Description
beta-carotene hydroxylase 2
Curator Summary
Converts β-carotene to zeaxanthin via cryptoxanthin.
Computational Description
beta-carotene hydroxylase 2 (BETA-OHASE 2); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: beta-hydroxylase 1 (TAIR:AT4G25700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G52570.2

Model type
Protein coding
Short Description
beta-carotene hydroxylase 2
Curator Summary
Converts β-carotene to zeaxanthin via cryptoxanthin.
Computational Description
beta-carotene hydroxylase 2 (BETA-OHASE 2); FUNCTIONS IN: carotene beta-ring hydroxylase activity; INVOLVED IN: xanthophyll biosynthetic process, carotene metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: beta-hydroxylase 1 (TAIR:AT4G25700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G53902.1

Model type
Small nucleolar RNA
Short Description
U3B; snoRNA
Curator Summary
U3 small nucleolar RNA
Link
InterPro Scan - TAIR