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13-5514-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6811657 [Map]; Strand: w
      • AT5G20170.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -859; Region: promoter
      • AT5G20180.1 - [+] show detail - Ribosomal protein L36
        Distance: 0; Region: intron2 (CDS)
      • AT5G20180.2 - [+] show detail - Ribosomal protein L36
        Distance: 0; Region: intron3 (CDS)
      • AT5G20181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -681; Region: promoter
    Flanking Genome Sequence: 13-5514-1 - 5-prime edge 
    CCTATAGAAT CATTGAATGA AAAGTGAGGA TCTATTTAGA GTCTGTTGAA 
    CAGATACTAA AATACATTAT AGTGGAACAT CACACAGAAG CATGAAGCAT 
    GTGCACTTTG TTTTCCTTCG CAGAGTTGAG AGTAACCTTA CCTTAAAAAG 
    TTATTTGGGA TTGTAAAACA GGTTTGCTGA GCCGATTGCT AGTCAGGAGT 
    TGGTGAGGCT GCCTGGTCAG GGGGTATCAG CCGGACTGGC ATCACTTTTA 
    CACAAAAGGC CTATGCCAAC AGCGTATTTC GGATGGAGGT CTGGTCTTGC 
    ATCCATTCTC TTCAAACAAG GAAATTAGGA TGTCAGCATT TCCCTTTTTA 
    TTCTTCAGAT TTGTAATCGC AGTTTTCTTC CAATTCCTAT GAAACATTAT 
    TGTATATCTC TCCACTTTTA CTTGNNCAAT GGTGANGCCC NNATTGCANN 
    CGTTTGANGN AANCATGCNT GNCCNNTNGA CTTNCNAATN TCCANNACAC 
    CCTATNATCT GTTTANANCT ANTNCCGGGT AACGTNTGTA TANNAAANCA 
    TACACTTGAC TNCAAAAAAT NTTGGACTNC NAAACNCTAA CCNANCTCNT 
    NCNNGNNAAA AAANCTANCN GNNGGGCCNN NNANNNACCG GNCCCANNNN 
    NNNNNANNNN NNNNNGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 6811541 [Map]; Strand: w
      • AT5G20170.1 - [+] show detail - RNA polymerase II transcription mediators
        Distance: -743; Region: promoter
      • AT5G20180.1 - [+] show detail - Ribosomal protein L36
        Distance: 0; Region: intron2 (CDS)
      • AT5G20180.2 - [+] show detail - Ribosomal protein L36
        Distance: 0; Region: intron3 (CDS)
      • AT5G20181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -797; Region: promoter
    Flanking Genome Sequence: 13-5514-1 - 3-prime edge 
    TCTATAGGAC AAAATTTGGG TAGTAAGTGA TTCACAGTAG TCAATATACA 
    CTGTATTTAA CCCGTCCAAA ATCCGAATGA GACACCTAAT TACTCAAAAG 
    CGAAAAACAG ATACAAGATT CACTTACAAA GGGGAAGGTG TAATTCCTTC 
    ATAAGCAAAG GAACTGAACC CTTGTCTTTG CTTGTGCTTA GGATTGGAAG 
    AGCATATAAC ATACACACGT CCACGACGTT TCACTGTTTT ACAAAACTCA 
    CACATCTTCT TCACAGATGA TCTCACCTTC ATTGCTTCTC ACTCTGCAAT 
    TCACAACCGA TCATTAACAC AAAACTCATT AGATGAAAAT GAAAGAGAAC 
    TCTTCAAAGT ATTCAACTTT AAGATTCAAA ACTAAGGATT GTATCCTCTA 
    AACATATCAT TTCTACTTAA TCTACCAGAA CAACTGCAAT CCTTAGTTGA 
    TCCGATGATG GAAGCAAAAG TAAAACGAAT CTGAAGCATC CATCTCTAAC 
    TACACGGAAT CACACAAGAG AAAACCCTAT AATAGATCCA GATACGAAAT 
    CGAGTGATAA TCAACGAGAA CCCATCAACC GAAGAACATA AAAATACCTG 
    CGAATT

AT5G20170.1

Model type
Protein coding
Short Description
RNA polymerase II transcription mediators
Computational Description
RNA polymerase II transcription mediators; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med17 (InterPro:IPR019313); Has 84 Blast hits to 82 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 6; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20180.1

Model type
Protein coding
Short Description
Ribosomal protein L36
Computational Description
Ribosomal protein L36; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36 (InterPro:IPR000473); Has 4494 Blast hits to 4494 proteins in 2031 species: Archae - 0; Bacteria - 3621; Metazoa - 52; Fungi - 76; Plants - 607; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20180.2

Model type
Protein coding
Short Description
Ribosomal protein L36
Computational Description
Ribosomal protein L36; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36 (InterPro:IPR000473); Has 4494 Blast hits to 4494 proteins in 2031 species: Archae - 0; Bacteria - 3621; Metazoa - 52; Fungi - 76; Plants - 607; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G20181.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR