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Mutant Lines
13-5559-1

13-5559-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 4; Position: 9495980 [Map]; Strand: c
  - AT4G16860.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: -164; Region: promoter
2. Chromosome: 4; Position: 9544620 [Map]; Strand: c
  - AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: -153; Region: promoter
  - AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
    Distance: -153; Region: promoter
Flanking Genome Sequence: 13-5559-1 - 5-prime edge
```
TGTCTAATTG CCTAGAACTT GAAATATTAT TTCTGTCTTG TACAAAGACT 
AAGACTTATC ATAATTAAGT GACAACCACA AAAATTCAAT CTCTAAAAAT 
ATCTTTGTAT GTAGTGTAAA AAAGCT
```

3 prime edge [+] show sequence

Chromosome: 4; Position: 9497340 [Map]; Strand: c
- AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
  Distance: -27; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TTATTTAGAC AGAAACTTAC ATTCGTTTCC TCTACACAGN TATTTTGAAA 
CACACATATT TTGTACAAGA CATTTTATCG TAAGAATGTA CTTATGATTG 
TTTAATATCA AAGTCTTGTT TCCCAATACA TACATGCACA TGGATTAGGA 
GAATAAGTAT ATCGATTATG AGGATTTTAA TTCAAATAAT ANAAGTGAAA 
ATACTAAATT AACACTAAGA ATTGTATACT AAAGTGAAAA TTAATTAGTT 
CGCTAAATTA AATTAACTCT CTAGTTTGCT AAAGTGAAAA TTAACTCTCT 
AGTTTGCTAA ATTACTCTTT TAGTTTTCAA GAATTGTATA ATTAGTTTAA 
AGTTTCGCTT AGTGCGTCAG CAACAACTGT AGGCTGCGAT TGCATTTGCT 
GCTGTTTAAG GAGCATTTGG TTTCTAAGCG TTTCATGTAC TGGATAGAAG 
AACTCGTGCT TGAGAGCATC CTCTGCGCTG ATTCNTNCCT NNGGTTNNCG 
GNNNNCNTNN NTNNNNNANG GNNNGANCNA NNNNGGAANN GCNNNTNNAA 
ACTCTNTNNN NNNNGNG

AT4G16860.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.
Computational Description: recognition of peronospora parasitica 4 (RPP4); FUNCTIONS IN: LRR domain binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 24682 Blast hits to 14766 proteins in 601 species: Archae - 8; Bacteria - 1131; Metazoa - 1818; Fungi - 127; Plants - 20736; Viruses - 36; Other Eukaryotes - 826 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16880.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Computational Description: Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.1

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16950.2

Model type: Protein coding
Short Description: Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary: Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description: RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link: InterPro Scan - TAIR