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13-5560-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 999646 [Map]; Strand: w
      • AT2G03290.1 - [+] show detail - emp24/gp25L/p24 family/GOLD family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5560-1 - 5-prime edge 
    GTAAACCCTA ACGAAGATCA TCATCCTCTT CCTGATTCTC ACAAAATCAT 
    CGTCAAGGTA TATATTTCAT CACAAATCTC ACTTGATAGA TTCTTCTTTT 
    TTAACATTAT TTGTTATCTT GTGGTTATTG TAGGTGATGC CACCACAAGG 
    GAAGAATTTG CACGAAGCCG ATAAGGTAGA GGCTGGTCAG TTCTCGTTTA 
    CTGCTTATGA AAATGGGAGT TACGTAGCGT GCATCACTGC CATTGATTAT 
    AAGCCGGAGA CGACGTTGAC CATTGATTTT GATTGGAAGA CTGGTGTTCA 
    CTCTAAGGAG TGGACCAATG TGGCTAAGAA GAGTCAAGTT GATGTAAGTG 
    GTTTTTTTAG TTTGTGTTTG GTTTGATGAA ATTTGAGCAT GTAAGCTAGG 
    AGCTAGGGTT TTGTCTGGTT TTGAATGTGA AAATGAGAGA AGATAGTGTA 
    NAGAGTTTGT AGCTTTTAAA AGTTNATTTA CTAAACCTAN NTGTTGNNGG 
    ATCTTTGATG TNGTNNNNGN NNATGATGGA GTNTNANGTT NNNACCTNGN 
    NGGGATACNG GNNTTTNCAT ACNTGAGGNG ANGNNTTNTN TNNNNAAAGG 
    NNNCNNACNN NNAACNNNCC TTNNAGCCTT ANTTNNNNNG GNNNNNANAA 
    AAAAGGNGNT NNNGNT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 893464 [Map]; Strand: c
      • AT2G03040.1 - [+] show detail - emp24/gp25L/p24 family/GOLD family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5560-1 - 3-prime edge 
    GGGTTTACGA TGAAGTATTT ACCAATAGAC ATGGCGGNTT CGTGAATCTC 
    CTCACCGATG CATTTCGTTT TCGAAGACTT TAACTCGTAA CGCATTGATA 
    GTGTCCTGGG AGATAACAAC GCAATGATCA AAAGCAAAAT CGAGCTTCGA 
    CGAAGATCCA TGGCGTCACC GGAAAAGAGA AGAGAGAGNG AGATAAAATC 
    TTGCAGTAGT CAATGTTTTT TTTGCCGTTT CGGGTAAGAC AAAAGAGTCA 
    AAGACGTTCT TTGCACACGT GTAATTATTT TATTGGTGAA GACACGTGAG 
    CAAGTCTTCT TTGTCATGAG CATAGTATGG GCTTTGTATA TGGAACTGGG 
    CTTAGTTTTG TAATGAACTT TCACTTGGCA CAATATTNGG GCTTATATAG 
    ATTAATATAT CCGAAATTTA AATTTTAAAT TTTCAATATA GGTCCGGACA 
    TTCANATTTT ATATNGGATT NAGNNNNAAT TTTTTTTATT NGGATANTNN 
    GGATGAAAAA GTNNATNANC CNTNNGGNTN ANNTGACTAT NNNNNNNNGG

AT2G03040.1

Model type
Protein coding
Short Description
emp24/gp25L/p24 family/GOLD family protein
Computational Description
emp24/gp25L/p24 family/GOLD family protein; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT2G03290.1); Has 637 Blast hits to 637 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 362; Fungi - 29; Plants - 206; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G03290.1

Model type
Protein coding
Short Description
emp24/gp25L/p24 family/GOLD family protein
Computational Description
emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT2G03040.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR