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Mutant Lines
13-5565-1

13-5565-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 7129491 [Map]; Strand: c
- AT4G11850.1 - [+] show detail - phospholipase D gamma 1
  Distance: 0; Region: exon10 (CDS)

CGTGAGACGA GTAAGGCAAT TGAGTGAGCT GAATTGGAGA CAGTATGCAG 
CAGAGGAAGT CACAGAGATG CCAGGTCATC TTCTTAAGTA TCCAGTTCAA 
GTCGATAGAA CAGGCAAAGT GAGTTCTCTT CCTGGATGGG AGACATTCCC 
AGATCTCGGT GGCAAGATCA TAGGATCGTT CCTTGCAGTA GAAGAAAACC 
TCACGATCTG AAAGTGACCT TGTAGGCTTG TAGTGATAAA CATTTGTTCT 
TTATTTCTTC CACTTCAAGA AATCTATCTG AGTGTGATCT GAATGAAAGT 
GTGTGCCTTT AGGGTCTAGT TGTGCTTTTC AAATTTATGA GCTGTAAATC 
TATTTATTAC AATTGATCTA TCAAAGTGTG TGTTCTGGAT TTTTAAAAAA 
TCATTTTTTC CATATGATTT AATTTAGTAA TGTTGTCATA TCTTTAGTAC 
TAGTATATGA TTACAATATC ACCTTGGCTT CTAGGAAATG AAAAATATCN 
AGTTGTGCTT GGTATCTCCG TAGTGTTGTC ATCTTCCANT CTGAAACAAA 
AATNTTTTGN AAGAGCGNAT GCCAAATCNT TCNTANATNA TGCNTNNNAA 
ANNTNNNNNN NNGNCCNNNN ACCNCCCNTG CCC

3 prime edge [+] show sequence

Chromosome: 4; Position: 7122368 [Map]; Strand: c
- AT4G11840.1 - [+] show detail - phospholipase D gamma 3
  Distance: 0; Region: exon10 (CDS)

NCCAATGAAA CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT 
CCCATGTTCT CTGGTTCCTC GAAACCTTGC TCTAGAAACC CTAGATGTTC 
TGCCCATAAC GACATTCTAT ATCCAAAGAT CTGCAAGAAA TTCAGACGAA 
CCAGGGTTCA GAAATGTTTT AGAAGACATA CATTGGTGGG TTTCTAGTTT 
TTCGTCTTAG AATGCTATCC TAGATTGAGA AGTAGAAGTC TCTGAAAGTC 
TTATTTACCT GACCACGAGG ACGAGAACCT TTCTTAGCCC ATGAATAGTG 
TGGCTGATAC CCTCCCATAG CGATTTCAGT GTCTCTAGTT CCTTCCAAGG 
ATCTCTGGTT GATATTCGCG GAACCAATTA AGACAAACTC ATCATCCACT 
ACCATACCTT TGGAATGAAC ATATATCATG AATCTCCGAC TCTTCAAAGC 
T

AT4G11840.1

Model type: Protein coding
Short Description: phospholipase D gamma 3
Curator Summary: member of C2-PLD subfamily
Computational Description: phospholipase D gamma 3 (PLDGAMMA3); FUNCTIONS IN: phospholipase D activity; INVOLVED IN: phosphatidylcholine metabolic process, metabolic process; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 2 (TAIR:AT4G11830.2); Has 2125 Blast hits to 1669 proteins in 399 species: Archae - 2; Bacteria - 519; Metazoa - 437; Fungi - 453; Plants - 551; Viruses - 0; Other Eukaryotes - 163 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G11850.1

Model type: Protein coding
Short Description: phospholipase D gamma 1
Curator Summary: phospholipase D (gamma)
Computational Description: phospholipase D gamma 1 (PLDGAMMA1); FUNCTIONS IN: phospholipase D activity, protein binding, phosphatidylinositol-4,5-bisphosphate binding; INVOLVED IN: defense response to bacterium, incompatible interaction, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D (InterPro:IPR015679), Phospholipase D, plant (InterPro:IPR011402), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: phospholipase D gamma 3 (TAIR:AT4G11840.1); Has 2106 Blast hits to 1666 proteins in 402 species: Archae - 0; Bacteria - 529; Metazoa - 440; Fungi - 441; Plants - 536; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink).
Link: InterPro Scan - TAIR