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13-5569-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185726 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -1212; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 4817; Region: intergenic
    Flanking Genome Sequence: 13-5569-1 - 5-prime edge 
    GTTCAAGCAT TGTTTTCGAA TTTTTTCATG CATCAAAGCT CGTTAAGACT 
    AGATGGGGTA TCCCTACATA GCGGGTGGGA CCCACGGCGA ATGGTTCATC 
    AAGTCTTCAA AAAAGAATAT ATACGATTGC ATTGCATATA CTAACGGATG 
    CGATCATACC AGCACTAATG CACAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 11185108 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -594; Region: promoter
    2. Chromosome: 5; Position: 11186614 [Map]; Strand: w
      • AT5G29550.1 - [+] show detail - transposable element gene
        Distance: -2100; Region: intergenic
      • AT5G29560.1 - [+] show detail - caleosin-related family protein
        Distance: 3929; Region: intergenic
    Flanking Genome Sequence: 13-5569-1 - 3-prime edge 
    GCTTGAACAA GTAATTTTGG GTCCGTAATA TAGCCCAAAT CACGAAAATG 
    CCCGAAAAAG TACTTAAAGG TCAAAATTTG GGGTCGACAA AAAGTCAATG 
    GAAAAGTTCC ATTGTCCTGC TTCTTTCGTC GGAGGGCTGT CTTTGGGCTT 
    TCCGAAAAGG TATCACATGC CAAGTTTGGC CTCACGGNCT AGAAGTTATG 
    GAGTCATAAA GTTTTAACCA AAAAAGAAAA GGTTAAACAT AAAAGAGGGA 
    TGCAACACCG AGGACTTCCC GGGAGGTCAC CCATCCTAGT ACTACTCTCG 
    CCCAAGCACG CTTAACTGCG GAGTTCTGAT GGGATC

AT5G29550.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 7.4e-126 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT5G29560.1

Model type
Protein coding
Short Description
caleosin-related family protein
Computational Description
caleosin-related family protein; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), Caleosin related (InterPro:IPR007736); BEST Arabidopsis thaliana protein match is: ARABIDOPSIS THALIANA PEROXYGENASE 2 (TAIR:AT5G55240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR