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13-5577-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 151839 [Map]; Strand: w
      • AT4G00342.1 - [+] show detail - unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 173...
        Distance: 0; Region: exon1 (CDS)
      • AT4G00350.1 - [+] show detail - MATE efflux family protein
        Distance: -80; Region: promoter
    Flanking Genome Sequence: 13-5577-1 - 3-prime edge 
    GACAAGAGAT TCTTTTTTAT GTTTGTTCTT GTAATTGGTG TTTCTGGTTT 
    GCCTAAGATT AAGGTTAGCC GTGGAGTAGA AGAAGAGAGA ACATGGGTTT 
    ATTGTGACCG TTCATATAGT TTAAAGTATC GACATGGGTT TATTGATTCA 
    ATCACGTAAT GATTCTCATA CAATACATTC TGTAAGAANN NACATATATG 
    CCATTAGAAG ATTATCAAAG TGACAAGAAC TTTCAAACTA AGAAGAAAGA 
    CATAATCCAT GGTTTTAACT GTTAATGTCG ATTAAGTCAA ATATCATACA 
    ACCAACAAAT ACAGTTTAAA CTAATTAAAC CCTCTTAGAG AGCAACACTT 
    ATAACATTTA AGGCTGGTTT TGACCAAATC ACCTTACAAA ATTGATCAAG 
    GAGAAGGTCT ACCAAAAGAC GACCGTGAGC CAGGGCTAGA CAAACCTGTA 
    TTGAGATCCG AACAGCCATG GCCTTCACTA CAGCTAGTGC CGCTCACTCC 
    TCGGTATGAA TCGCCGGAGA CAAGAGCTTG TATTAATTTA GGCGGNGGAG 
    GAACCGTCAC CTCCACAACT CCTTCAAGCA TCTTCACTAC CGTTCCCATT 
    GCTGGCCTTA TCTCTTCATT GGCTNGNTGC ACCATATCGC CACCGNTGCC 
    ATCCTNNTCA CCTNTTCAGN GTTATATTCT CCGNTGAGTC TANAGTCAAC 
    CACN

AT4G00342.1

Model type
Protein coding
Computational Description
unknown protein; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00350.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link
InterPro Scan - TAIR