1. Home
  2. Mutant Lines
  3. 13-5601-1

13-5601-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1762751 [Map]; Strand: w
      • AT5G05850.1 - [+] show detail - plant intracellular ras group-related LRR 1
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-5601-1 - 5-prime edge 
    TCAAAGTCAT TTCATAGCTG CTGGTCAAGG TAAGGATCTC TAGGCGGATT 
    CGAGCCAAGA TACTCCGAGA CCTCAGTAAC ATACGTTTTC AGCTTCGAGG 
    TGGTTCGGGT GAGCCAATCG GTGTTTGTCT GATCCATCTC ATCCTTCATA 
    TTCGCCATCT TCTCTTCCTC TTCCAACATG CTGACCCATC TCTTACCCAT 
    ATACATTTTA ACCGCATCCA CACCTTGTTT CACGACTTCA TCAGGCGGGA 
    CAACAAGCGG GTTTTGGTCC AAGTTCAGTT TGGTCAAGTT CACGAGCGTG 
    CCAAAAGCGT CTGGAAGAGA ATGGATCTGG TTGTTGCTCA AGTCGAGTTC 
    TTGGAGGCTT ATGAGATCTC CGAATGAAGC AGGGAGATCT TGGAGATCGC 
    TGAAGTTACT GCTCAGGTTA AGGTACTCGA GGTTCGTGAG CAGCCCGAAA 
    GAATTTGGGA GACCATTGAG TTCGTTGAAG TGTGCATCGA GGTAGCGTAA 
    GGATCTCATT TCACCAATGG AAGTTGGTAA TGATCTGATT TTGTTGAGAT 
    GGATCAAGAG CTTCTCTAGT TTCACTAGCT CGAATCCGAT GTTTGTTGGT 
    AAGTAGGTGA NATTGTTGTA GCTCGCATNC AANACAACCA ACGATCTTTA 
    ATNNNTNNNA AAAACNGAAG TANNAAAAN

AT5G05850.1

Model type
Protein coding
Short Description
plant intracellular ras group-related LRR 1
Curator Summary
Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
Computational Description
plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR