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13-5607-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 387179 [Map]; Strand: w
      • AT1G02080.2 - [+] show detail - transcription regulators
        Distance: 333; Region: intergenic
      • AT1G02090.1 - [+] show detail - Proteasome component (PCI) domain protein
        Distance: 98; Region: intergenic
    Flanking Genome Sequence: 13-5607-1 - 5-prime edge 
    CTTTCATGCC CGCCTAAGAG GCAGCTGTCG CAGACTAAGC AGGTTTCAAC 
    ATGTGAGGGG CCAAGGCGCT GGCTAGTGGT CAAAAGACGG AACACTGAGA 
    ATATCTGTAT CATTCCATAT GATCCAAGCG CCTAGCTTTG CTCAAGTGTC 
    AAGACTATTG ATTACTGAAT ACTAAATTCA AAGCCATTTT TCTTTTAATG 
    GGCAGAGAGA CACCAAATTT GCTAATGAGG GAAATCAAAC ATAACAAGGG 
    GTTATTGTGA GAGAGAACAG AGGATCTTAT ACAAGTTGAA AATCCGCAAC 
    CAATAATCAT AATCTACTCT CGGTAAATGG AATGTCAATC CGCACTGACC 
    ATTTGCTCTC TCTTGCTCCT CTACCTTGTT ACAGGATGCC TCCTCCTGCG 
    TTCCAAAGTT GAATGTGTGT ATGTTATATC ATCTCCTTTG TACTTATCAT 
    CTCACTCATA TCTAATATTC NTTACCTCTT TGGTNGGATN ANNANNCCGG 
    GCCGNNNACC ACCCNTGCCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 387063 [Map]; Strand: w
      • AT1G02080.2 - [+] show detail - transcription regulators
        Distance: 217; Region: intergenic
      • AT1G02090.1 - [+] show detail - Proteasome component (PCI) domain protein
        Distance: 214; Region: intergenic
    Flanking Genome Sequence: 13-5607-1 - 3-prime edge 
    CATGAAAGTG TTGTTTATTA CGTCATCGAC TAGATNNNAC CATCGGAATT

AT1G02080.2

Model type
Protein coding
Short Description
transcription regulators
Computational Description
transcription regulators; FUNCTIONS IN: transcription regulator activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196).
Link
InterPro Scan - TAIR

AT1G02090.1

Model type
Protein coding
Short Description
Proteasome component (PCI) domain protein
Curator Summary
encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype.
Computational Description
FUSCA 5 (FUS5); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); Has 689 Blast hits to 689 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 405; Fungi - 166; Plants - 80; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Link
InterPro Scan - TAIR