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13-5616-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19514311 [Map]; Strand: c
      • AT2G47560.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -1583; Region: intergenic
      • AT2G47570.1 - [+] show detail - Ribosomal protein L18e/L15 superfamily protein
        Distance: 1587; Region: intergenic
    Flanking Genome Sequence: 13-5616-1 - 3-prime edge 
    NNTTAAACGG NNCTAGGTAT TTTTNTTGAC CGTTACCNAC CGTTTTCATC 
    CCGCCAAGGT TAGTGAAATG TTGTTTAAAA TAGTATTTCG ANGTACAAGT 
    TGGTTTTTTA ATTCACGGGT TTGCTCATAC GTCGGCCGCA GAAATAGCGA 
    ATCTATGGGT ATTCACCTTA AGTTGCCATG TTGGGTAATT TATTTGATTA 
    TTGTTTAACC AACAGCAATA AGAGAGAGAN TNGATTGTAT TATGATTTGA 
    TGAACAAGAT AAGGTTGTCC ATTGGTCAAA ACATTCCCCA AGTTGGGATA 
    TATTTCTATT TTCATCATCC TTCCATGTGA TGTGCCGTGC GGCAAATCTA 
    GAATAATGTA CTATCAAAGT TGTCAAAAAG TAAAAAAGTA AAAAAACATA 
    CCAAAATATC AAAAACAATC TTTGTTAGTT TGTTTCCTTT CCGATGGAAT 
    CAATTTACGA CACACCAAAA TAAAATGCAA TCTAGGACCA TGTTTTGTTG 
    TTTGAATTTC ATTCAGTTAA TAAAATGATG ATACAAGAAA TAATCATTCA 
    CATTTCTATG AAACTTCANA TGACCACTTT CTCTTTTTAA AATTTTCTTA 
    AAAAGGATAT TGGTAGTCAA GAAAAGGCAA GAGAGAAAAA CATTTTACAA 
    AAGNAGTTAG GCTGAAAATA GGGACATTTG NGAAAAAGTA AGGAATTGAT 
    TTTNCGGAAA AAGGGAGGTA ANTCCNTAAA ATTAANNAAG GNNAGNCGCT 
    NCTNNTATCA CCANNCCCGG GGNCGNCNAN

AT2G47560.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: AtL5 (TAIR:AT3G62690.1); Has 10475 Blast hits to 10453 proteins in 314 species: Archae - 0; Bacteria - 0; Metazoa - 2615; Fungi - 944; Plants - 5266; Viruses - 125; Other Eukaryotes - 1525 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47570.1

Model type
Protein coding
Short Description
Ribosomal protein L18e/L15 superfamily protein
Computational Description
Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic large ribosomal subunit, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L18e (InterPro:IPR000039); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G27850.1); Has 755 Blast hits to 755 proteins in 295 species: Archae - 15; Bacteria - 0; Metazoa - 328; Fungi - 154; Plants - 126; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Link
InterPro Scan - TAIR