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13-5641-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 22311137 [Map]; Strand: c
      • AT3G60350.1 - [+] show detail - ARABIDILLO-2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-5641-1 - 5-prime edge 
    GGTTTCAACA TCCGCCCTTC TCGTCTCTCT CTCTTTACCT TCATTGCCCA 
    ATTCCTCTAA TTCTTCCTCC TTTCTCTGTC TCTCGGAATC AGGGAAGATA 
    AAGTTCTTCC TTTTTTCTCC AAAGGTGATT ACNTTTAAGC TCTTTTGCCC 
    TTTTTTTTTT NGGGTNANAA NAGTTTNTNN GGGGGCNCGT TNNAATAACN 
    ANCCNGGGCN GNNAACNACC CGGGCCCTAN NGGGNGNGGT TTTANNGGGG 
    GGGGGGNNTN NNANNNGGGG GGGGG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11267207 [Map]; Strand: c
      • AT4G21110.1 - [+] show detail - G10 family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-5641-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTCAACACAA 
    CCCTAAAGAG GCTTCTTCGA CGACGTTGGT TCTTCTTCCT TTGTCCTGCG 
    CCGCGATCTC TCCTTCTCCA ACTTCCCTCG TCCTGTCCAA AGGTAAGCT

AT3G60350.1

Model type
Protein coding
Short Description
ARABIDILLO-2
Curator Summary
ARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings.
Computational Description
ARABIDILLO-2 (ARABIDILLO-2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARABIDILLO-1 (TAIR:AT2G44900.1); Has 10264 Blast hits to 5575 proteins in 291 species: Archae - 0; Bacteria - 64; Metazoa - 4302; Fungi - 778; Plants - 4057; Viruses - 0; Other Eukaryotes - 1063 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G21110.1

Model type
Protein coding
Short Description
G10 family protein
Computational Description
G10 family protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: G10 protein (InterPro:IPR001748), BUD31/G10-related, conserved site (InterPro:IPR018230); Has 466 Blast hits to 466 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 126; Plants - 80; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).
Link
InterPro Scan - TAIR