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13-5656-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3786564 [Map]; Strand: c
      • AT1G11270.2 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G11270.3 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G11270.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5656-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCGTC AGGTGAAATT GCTGCTACCA CACGATGTTG 
    TTGGGCTCAT CCTCGA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3786564 [Map]; Strand: c
      • AT1G11270.2 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G11270.3 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon2 (CDS)
      • AT1G11270.1 - [+] show detail - F-box and associated interaction domains-containing protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5656-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAAAGC 
    CGTTTACTAG AGCAATGTCT TTTCAAAGCC AAACTGGAGC CATCTCTCTC 
    TCTTTCCGAT CCAACAACAC TCGA

AT1G11270.1

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 1191 Blast hits to 1176 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1189; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11270.2

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11270.3

Model type
Protein coding
Short Description
F-box and associated interaction domains-containing protein
Computational Description
F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT2G34280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR