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13-5666-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6599557 [Map]; Strand: w
      • AT3G19085.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-c...
        Distance: -32; Region: promoter
    Flanking Genome Sequence: 13-5666-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATGACA AGAGCATGCA TCTTGCAGAC ATTTCGTACG 
    ATGATGGAGA AACTCATCGC AGGTTGTCCT GTTCTTGAAG ACTTTGCCTT 
    AATTCTGCCT GATGATGAGC GCCACAAAGC TATGCCTTCT CTGCGTGTGA 
    GGTCTCAGAC TTTAAAGAGC TTTCTGTTCG CGTTTGAGTT TAATACCACT 
    GGTAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6673352 [Map]; Strand: c
      • AT3G19260.1 - [+] show detail - LAG1 homologue 2
        Distance: -1833; Region: intergenic
      • AT3G19270.1 - [+] show detail - cytochrome P450, family 707, subfamily A, polypeptide 4
        Distance: 375; Region: intergenic
    Flanking Genome Sequence: 13-5666-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTTA 
    GGGGGTCATA ACATCATATG AATAAGGTTA TTTTTACAAC AAAAAAGAAA 
    TCATATGAAT AAGGCATATG TTTTAGGGTG GACCATTCCT CCAAGATATG 
    ATGAAACGGA ATT

AT3G19085.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT2G26030.3); Has 310 Blast hits to 305 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 310; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G19260.1

Model type
Protein coding
Short Description
LAG1 homologue 2
Curator Summary
LAG1 homolog . Loss of function mutant is sensitive to AAL-toxin. LOH2 is presumed to function in sphingolipid metabolism.
Computational Description
LAG1 homologue 2 (LOH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 longevity assurance homolog 3 (TAIR:AT1G13580.3); Has 1277 Blast hits to 1277 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 612; Fungi - 306; Plants - 183; Viruses - 3; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G19270.1

Model type
Protein coding
Short Description
cytochrome P450, family 707, subfamily A, polypeptide 4
Curator Summary
Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family.
Computational Description
"cytochrome P450, family 707, subfamily A, polypeptide 4" (CYP707A4); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 707, subfamily A, polypeptide 1 (TAIR:AT4G19230.1); Has 34460 Blast hits to 34219 proteins in 1800 species: Archae - 82; Bacteria - 7577; Metazoa - 11415; Fungi - 5354; Plants - 8009; Viruses - 6; Other Eukaryotes - 2017 (source: NCBI BLink).
Link
InterPro Scan - TAIR