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13-5688-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23313001 [Map]; Strand: c
      • AT1G62940.1 - [+] show detail - acyl-CoA synthetase 5
        Distance: 254; Region: intergenic
      • AT1G62950.1 - [+] show detail - leucine-rich repeat transmembrane protein kinase family protein
        Distance: -2293; Region: intergenic
    Flanking Genome Sequence: 13-5688-1 - 5-prime edge 
    GGGAAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CGGGATTTTC 
    CCATCCTACT TTCATCTACA CTATAACATT TTACAGCTTG AGAAAGCGGT 
    GTGTTCTTGC GGTTTGAAAT CGCTTTTCTG TGAGTTATAT CAATGTTTTG 
    ATTAGAATCT TCCGAGGAGA TAGTTTAATC TTTCTAGTTG TTGCGCGGTG 
    CAGAATTGAA CTGTAGAATT TCCTAATCAA GGAGCAATAA TGAAACCACA 
    AAGAGTATTT ATTGTTTAAG GACAATTTCT TTAACCAAAG TAGATTAATT 
    AAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 23312998 [Map]; Strand: c
      • AT1G62940.1 - [+] show detail - acyl-CoA synthetase 5
        Distance: 251; Region: intergenic
      • AT1G62950.1 - [+] show detail - leucine-rich repeat transmembrane protein kinase family protein
        Distance: -2296; Region: intergenic
    Flanking Genome Sequence: 13-5688-1 - 3-prime edge 
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCTNT 
    GNNNAANNAG ATANGCGCAC NTGANNTGCT CTCATTANTG CTCAAACNAT 
    GAGTNTNNAT TCACNATGAA CNCANCANGA TNCTNANCNC AGAACTCCTA 
    CNNGGCTAGC GACATNAACA TCTTATCACC AAAGATATCT GNNCTAATCC 
    CATTCTNANN NNTNAATCTT CATGGNTCCT TNNNATATAA CCANGATNAT 
    AGTTGTCNAG NTNANACTTG ANATAGCTCA AGGATGGACA ATTTATCGTC 
    TTTCACTTNA CTTNNNTTTT ATTCAACTNT CTCCAATGTA TAACTNCTTN 
    AATACTCAAT AGGAACTAGG TTAGGGAAAG TGTATGAAAT TTTAATNGNA 
    TATNTGNATG TNTGTATANC TTTCTCCNAG AGNCAGATCA TATCGCAGAN 
    ACATNCTATN GTAATTGAGG GCANTGGTCA NNCACCTANT NCTACTGTCT 
    TATGTNAGAC TAGANGANNC TANANAATCN AGNANCNGNN NTCAGACTTC 
    GATGTTTCNA ACTANACAAN TATAANCNGT ACCGAACTTG ATCANCGGNC 
    ATANTATAAA TGNNTACAAC TNAAANACAA CGGGGTNTTA AATACTGANC 
    ATNAGAGANC ATTCAAAGTC TNTCATGGAG CNNTGATGCA GNGATNCACA 
    NACCCCACAG TGCAATGTNG TGTNTCTAGG AATTGGCACT ACGAACTCGG 
    CAGNGAN

AT1G62940.1

Model type
Protein coding
Short Description
acyl-CoA synthetase 5
Curator Summary
encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.
Computational Description
acyl-CoA synthetase 5 (ACOS5); CONTAINS InterPro DOMAIN/s: AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: 4-coumarate:CoA ligase 2 (TAIR:AT3G21240.1); Has 80303 Blast hits to 72777 proteins in 3663 species: Archae - 1209; Bacteria - 52830; Metazoa - 3472; Fungi - 4003; Plants - 2782; Viruses - 1; Other Eukaryotes - 16006 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G62950.1

Model type
Protein coding
Short Description
leucine-rich repeat transmembrane protein kinase family protein
Computational Description
leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G12460.1); Has 173083 Blast hits to 114691 proteins in 4339 species: Archae - 116; Bacteria - 15745; Metazoa - 52877; Fungi - 7816; Plants - 76612; Viruses - 257; Other Eukaryotes - 19660 (source: NCBI BLink).
Link
InterPro Scan - TAIR