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13-5690-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1067202 [Map]; Strand: w
      • AT3G04070.2 - [+] show detail - NAC domain containing protein 47
        Distance: -4099; Region: intergenic
      • AT3G04080.1 - [+] show detail - apyrase 1
        Distance: 588; Region: intergenic
    Flanking Genome Sequence: 13-5690-1 - 5-prime edge 
    GGGAAAACTA ACAAAATCGG TTATACGATA ACGGTCGGTA CACTAGAAGC 
    TAATAGGCTA TTCAAGGCTA CTCAATCTAA CGTTAGTCAT TTCGCAAACT 
    ATTAATCCTA TGACGTTTTA TTTGTTGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1067117 [Map]; Strand: w
      • AT3G04070.2 - [+] show detail - NAC domain containing protein 47
        Distance: -4014; Region: intergenic
      • AT3G04080.1 - [+] show detail - apyrase 1
        Distance: 673; Region: intergenic
    Flanking Genome Sequence: 13-5690-1 - 3-prime edge 
    ACATTGAAGG TTCGATTTTT TCAACATATT GCCAAGTATA ACATGTTAGA 
    ATGAATTTTT GATACATGTG ATGATAAAAA CTTAGGGTAG GAAAAAAGAA 
    TAGTTTTTCG TCTTCGAGGA CTTTAAAGTA TAAGATGTTG ATTGGTGAGT 
    AGTTGCAAGC T

AT3G04070.2

Model type
Protein coding
Short Description
NAC domain containing protein 47
Computational Description
NAC domain containing protein 47 (NAC047); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC-like, activated by AP3/PI (TAIR:AT1G69490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04080.1

Model type
Protein coding
Short Description
apyrase 1
Curator Summary
Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination.
Computational Description
apyrase 1 (APY1); CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: apyrase 2 (TAIR:AT5G18280.1); Has 1435 Blast hits to 1431 proteins in 229 species: Archae - 0; Bacteria - 35; Metazoa - 605; Fungi - 313; Plants - 348; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
Link
InterPro Scan - TAIR