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13-5728-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 26740721 [Map]; Strand: w
      • AT1G70920.1 - [+] show detail - homeobox-leucine zipper protein 18
        Distance: 2056; Region: intergenic
      • AT1G70940.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: -2333; Region: intergenic
    Flanking Genome Sequence: 13-5728-1 - 5-prime edge 
    TTGATAAGTA TATATCTCAG AGATAAAGCA TCAGTCGTAT ATTAGTCTAA 
    ATTTCGTTAT CGTTCCTACA ATTCCGTGTA TCAAAGGCGA GAACTATGTT 
    AAAGTTTGAC TTGGACTTTG ATTATTTAAC CACAAACATA ATTTTATTGC 
    ATATAGTGTG TTTATTAAAT GATACTGTAC TTTAGTTTCT GTTTTGTATA 
    ATACTTCTTT TTCTTTACAA TAATATTTTA GTACTCTATT GAACTCAAAG 
    TTTAACCAAA ATTTTAGATG ATATTTTTGT AACAATTAAA AGAGGGCACA 
    TTTTTAAACT TAGCCATAAA CATTTTGAGT CACTCAGTCA TAGCCTTATA 
    CGCACAACAC TGTGTGTACT AGCTTTATTG TGGAATATGT ATATTTTTGT 
    GTAGATCTTT ATGTACATTA GCTAGAATTA TCAATTATAT AAACACTTAA 
    ACAGATGGAA TAATTTGGTA GTTAATGGAA ATGGTTAAGC TGACATATGA 
    AGTGCTTCCA AAAGTTCCCT AAATCTTTTG CCGATATCTA GGATTATTTA 
    TTTTGTTAAT TGAATGTCAA TTGAGTGAAA ATATTAAGAT ATTATAATAG 
    GTTGATTCGA TTATGATAAA TAGTTGAATA AAGNGTATAA TATGGTTTTG 
    TAAGGACGGC AGAT

AT1G70920.1

Model type
Protein coding
Short Description
homeobox-leucine zipper protein 18
Computational Description
homeobox-leucine zipper protein 18 (HB18); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-leucine zipper protein 17 (TAIR:AT2G01430.1); Has 12733 Blast hits to 12688 proteins in 617 species: Archae - 0; Bacteria - 0; Metazoa - 10651; Fungi - 202; Plants - 1634; Viruses - 5; Other Eukaryotes - 241 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G70940.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Curator Summary
A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane.
Computational Description
PIN-FORMED 3 (PIN3); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: in 8 processes; LOCATED IN: lateral plasma membrane, plasma membrane, vesicle membrane, cell surface; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G23080.1); Has 1983 Blast hits to 1757 proteins in 550 species: Archae - 37; Bacteria - 1198; Metazoa - 14; Fungi - 0; Plants - 487; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Link
InterPro Scan - TAIR