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13-5739-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19554941 [Map]; Strand: w
      • AT2G47700.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -357; Region: promoter
      • AT2G47710.1 - [+] show detail - Adenine nucleotide alpha hydrolases-like superfamily protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 13-5739-1 - 3-prime edge
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCATT 
    CAAGACAATA TACATTTGCA TCTATATGTG TAATTGTTTA CTACATACAA
    TGTTTTGGTA TCCTTAGACA ATCAATATTC GTGTGTTATA ATATGCTAAT
    CTTTCTCATA ACAAAATGGA TGTGAAAGTT ATAATAAACT TCATATGAAA
    GAGACTAGAG AAGAAAACAA ATCAACTAAA TAGAGATTAA TGATTTAAAT
    GAACAAATTT ATAGTTTGGT TGTTGGTTCA GATGGATGGA TGGTTTGATG
    ATCATCTATC CAAAACTAAA AACTAAAGTA ATAAAATAAT AATAAAAAAT
    TATCCACAAA TGGGAGAGGA AAGGAAAGAA AAGGGAGAGT CCAATGTCAT
    TGTCCGGTTT TGAACCACGT CATCTCTAAC AGGTCGGACG AGAGAGAGAG
    AGAGAGAGAG AGAGAGAGAG AGAGAGNGNN AGNNGAGAGA TATATTTNTG
    TGAGATATTA NCCNCGNGTG CGCGCCNNAN GGNGCACANN ATNAGAGAGA
    NANANANAGN GAGAGAGANA CGGGNTCTCN NATNNATTTG TGNNACACAC
    CCCCTCTNTT NTNTTTTTTN GGGCTCTNNA AAAAAAAAAA TNTTNGNGNG
    NCCCCCCCNN NNTNGGNCGN GGGGNAAAAN ATNNCCCCCC NANNNNANAG
    ANGGGGGGGN GAANAAAAAN NNTCTAAANA GNGGGGGGGG GGN

AT2G47700.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RED AND FAR-RED INSENSITIVE 2 (RFI2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G05545.1); Has 457 Blast hits to 456 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi - 17; Plants - 198; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47710.1

Model type
Protein coding
Short Description
Adenine nucleotide alpha hydrolases-like superfamily protein
Computational Description
Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49050.1); Has 2830 Blast hits to 2747 proteins in 619 species: Archae - 112; Bacteria - 1833; Metazoa - 129; Fungi - 32; Plants - 667; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink).
Link
InterPro Scan - TAIR