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13-5752-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20493747 [Map]; Strand: w
      • AT1G54955.1 - [+] show detail - transposable element gene
        Distance: -2; Region: promoter
    Flanking Genome Sequence: 13-5752-1 - 5-prime edge 
    GCGNNACNNG NCCGTNATCC GNGCTNCCNN NACNGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAT TTATTCTCAG AGATCACGTT ACCACCAACA 
    GTAAATGAAA ATATCCTTTT TGTAAACTAA CAACTATTAC GTTTTGATGT 
    TACTTCCAAA TATATTTCCT TTGATATGAA ACTATATATC CACATAGATA 
    TAGATGGCAA ACTCTACTCT CCAATAGAAT TGTGCCACGT CAGCCTCGTT 
    TTTTTGCTGA AATGTTTTAG TGCATCCTGT TATACTTTGT ACTTTCAACT 
    TAAGCGTTGG AGAGTTTTTT GAATAACACA TGATCTTCAT CTAGCACTTC 
    CCCAAGAATT TTGTACACAA GGTAACTAAA AACCTTTAAT AAGCTAATTT 
    GTTTTATTCT TACAAAACCA GGCATCTAAA AAGATTGTTT TGACATATTA 
    TGGCGTGGAA AAACTGACAT ATTCAAACCT TCTTTCTCGA CAAAAGACAC 
    ATGGAATCAT CTTAGAACAA CGTCTCTCAC CGTCACTTGG CACAAAGGCG 
    TTTGGTTTAC TCATGATACT CCAAAGTTCT CGTTTTGTGT CTGGTTGGCA 
    GCTCATAATA GATTACCAAC GGGGGATCGA ATGATGAAGT GGATTGGTGG 
    CGCAACGGGA ACTTGTGTAC TTTGCGATAA CAACATCGAG ACTAGAGATC 
    ACCTTTTTTT CTCTTGTCCC TTTGTTTCAN AAATCTGGGC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20493688 [Map]; Strand: w
      • AT1G54955.1 - [+] show detail - transposable element gene
        Distance: -61; Region: promoter
    Flanking Genome Sequence: 13-5752-1 - 3-prime edge 
    GAAATGCTAT GTTAGGTTTC TGGTAGAGCC GTCAAGGAGA GAAAAATTTG 
    AGAGGGTTGA GCATTTGCTC TTGAGAAAAA GAGAGTGATT CTTAGATTAG 
    GTGTTAATCT AAGTCTCAAG TTCATTAGAA TTTGTTGATG TCGAACTAAG 
    GGGTGTCTTA GTGTCGAATA ATTCCATTTA GGCAAAGCT

AT1G54955.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)
Link
InterPro Scan - TAIR