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13-5752-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20493747 [Map]; Strand: w
      • AT1G54955.1 - [+] show detail - transposable element gene
        Distance: -2; Region: promoter
    Flanking Genome Sequence: 13-5752-1 - 5-prime edge
    GCGNNACNNG NCCGTNATCC GNGCTNCCNN NACNGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCTAT TTATTCTCAG AGATCACGTT ACCACCAACA
    GTAAATGAAA ATATCCTTTT TGTAAACTAA CAACTATTAC GTTTTGATGT
    TACTTCCAAA TATATTTCCT TTGATATGAA ACTATATATC CACATAGATA
    TAGATGGCAA ACTCTACTCT CCAATAGAAT TGTGCCACGT CAGCCTCGTT
    TTTTTGCTGA AATGTTTTAG TGCATCCTGT TATACTTTGT ACTTTCAACT
    TAAGCGTTGG AGAGTTTTTT GAATAACACA TGATCTTCAT CTAGCACTTC
    CCCAAGAATT TTGTACACAA GGTAACTAAA AACCTTTAAT AAGCTAATTT
    GTTTTATTCT TACAAAACCA GGCATCTAAA AAGATTGTTT TGACATATTA
    TGGCGTGGAA AAACTGACAT ATTCAAACCT TCTTTCTCGA CAAAAGACAC
    ATGGAATCAT CTTAGAACAA CGTCTCTCAC CGTCACTTGG CACAAAGGCG
    TTTGGTTTAC TCATGATACT CCAAAGTTCT CGTTTTGTGT CTGGTTGGCA
    GCTCATAATA GATTACCAAC GGGGGATCGA ATGATGAAGT GGATTGGTGG
    CGCAACGGGA ACTTGTGTAC TTTGCGATAA CAACATCGAG ACTAGAGATC
    ACCTTTTTTT CTCTTGTCCC TTTGTTTCAN AAATCTGGGC
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20493688 [Map]; Strand: w
      • AT1G54955.1 - [+] show detail - transposable element gene
        Distance: -61; Region: promoter
    Flanking Genome Sequence: 13-5752-1 - 3-prime edge
    GAAATGCTAT GTTAGGTTTC TGGTAGAGCC GTCAAGGAGA GAAAAATTTG 
    AGAGGGTTGA GCATTTGCTC TTGAGAAAAA GAGAGTGATT CTTAGATTAG
    GTGTTAATCT AAGTCTCAAG TTCATTAGAA TTTGTTGATG TCGAACTAAG
    GGGTGTCTTA GTGTCGAATA ATTCCATTTA GGCAAAGCT

AT1G54955.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05145.1); similar to hypothetical protein 23.t00046 [Brassica oleracea] (GB:ABD65629.1); contains domain NON-LTR RETROELEMENT REVERSE TRANSCRIPTASE RELATED (PTHR19446:SF34); contains domain REVERSE TRANSCRIPTASES (PTHR19446)
Link
InterPro Scan - TAIR