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13-5755-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19650008 [Map]; Strand: w
      • AT2G48030.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-5755-1 - 5-prime edge 
    CTTTCCGGGG ACGGCGGAGA CGACGGCGGA GGAAAGCAAT GAGGTTCAAC 
    ATACTAAAAA AAGGGCGATC GCATTTATTA AGTCTAAAAC TAGTAAAAGT 
    ATATACTTTT GAGTTTTGAC AATGAGAGAG AGAGAGATGA TATAGATTTC 
    CTTTTATACG AAGAAATGAG AGAGAGAGAG TTGTGGAATG TGGAGTTTGC 
    CTGCACAAAA AAGAAGGTCA TATGAGCTTC TTGGGAAAAT GGTATTTGGC 
    TTACGTGGCA TTATCAACTC ATCATCGATG TTAATAAATG TACCAAATCC 
    TTTTCTTTTT TGTGTGTCTT AATTGTATTT TATTACTATT ATTTTAGAAA 
    AGCCCACCAA TCATTNGGTT TCAGTCTTTT ATTTTCCAAT ACAGAAATCA 
    TGAAATACAG TATGGTATTC TGTTTTTGTT TTGTTTAGGT NAATCTCGAA 
    CTAAAAGTAT ACAATTATTA TGGACGTTAA ACAACTACGA AGGAATAGGT 
    TTATGAACCA TCGTCAGAGA AGAGAANGGG AGCATATTCT ATNNTTAACG 
    AAAAGGAAAT TAACAACTCC CAAAAAAAGT TATNGAGATT TTATTTTTAT 
    ATATGGGTTT AATGCATGGT ATATATATNA GCTGGNGGGT CAGGGCCTAT 
    TTTNACCNTG GGACCTCCCT NATTNAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19649892 [Map]; Strand: w
      • AT2G48030.1 - [+] show detail - DNAse I-like superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5755-1 - 3-prime edge 
    CCGGAAAGCC AGAATCTCCG TCAACCACCA CCACCTCTCA GTTGATTCTT 
    CTCCTGAGAC TCATCATCAT CAAAATGGCT TTTCATCGGC AGCCGCCATC 
    CACCCAAACC CGGACAAAAC CATCACAGTG GCCACCTTTA ACGCTGCTAT 
    GTTCTCCATG GCTCCCGCCG TCCCTAGCAA CAAGGGCTTG CCATTCCGGT 
    CCAAGTCTAC GGTTGACCGC CCCAAGAGCA TTCTCAAGCC CATGAACGCC 
    GCCGCATCTC CTACTCACGA CTCTAGAAAG CAACAGAGGT TTGCCAAATC 
    CAGGCCTAGG AGAGTCTCCA TCAATCTCCC CGACAACGAG ATCAGCCGCC 
    AGCTCAGCTT CCGGGAGGAT C

AT2G48030.1

Model type
Protein coding
Short Description
DNAse I-like superfamily protein
Computational Description
DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G21530.1); Has 404 Blast hits to 404 proteins in 167 species: Archae - 0; Bacteria - 325; Metazoa - 1; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Link
InterPro Scan - TAIR