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13-5758-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24135057 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5758-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    ATCCTCTCAT GCTCGTCGAA TCACGCAATC NCNGNCCGAT ANNCNANANC
    GAAGCACTTA GATTTCTATG TGGGCAACAA CCGCATGGTA TTCTTTATCA
    TTGTTCTATC TGCAACTTCA CACTGTGCAT TGGTTGTATC AAATCACCAC
    CACCTCTTGT TGTCGAGAAT GTGAAGACGC ACAAGCATCC TCTTACTTTC
    TTTCCAAGAG GAGTCTACTG CACTTGTAAC GTTTGTGGGG TAAAAGGACT
    TATACTCTCT TATATGTGTC TTCAGTGTGG TTTTGCGGTC CATTGTAGTT
    GTGTAGACTT ACCTCAAGTC ATGAACATAA ATCGTCATGA TCATCGCATT
    TCTTTCACAC AGCATCTTGG TCCTGGGTAT TTGAACTGTG GAGTTTGCCG
    AAGAAGTGTA TGCCAATTCA ATGGAGCTTA TTCTTGCTTA GTTTGCCCCA
    ACTATGCAGT TCATTCACGG TGTGCAACAA GATATGACAT ATGGGATGGT
    GTGGAACTGG AAGGGAAAGC TGAGAATATT GAGGATATTG CGCCATTTAA
    GGTGGTTGGG GATGACTTGA TTCGTCATTT TANTCACAGC AAACATTCTT
    TAAGACTCCA CAAGAACAAT ATCATTTATG ATGATAGTAC ACGATGTGAA
    GCATGTGGCC ATCCAGTCGA ATTTGGTCGA ATATACAATT GNGAGGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24135052 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5758-1 - 5-prime edge
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA GTGACAAGGA TGATTTACCT CTTTCGAGAG
    ATGGATGCAG CCCACGTGGA AGTACAACTC GCATCCAAGA CATGAATAGG
    ATGATCCAAT AATTCTATTC TTGCAAACTT CACAAGGGGT TTTCTCCTGT
    CTTTTCTTCA GGAAGACAAG TGGATGGTCA TGGCAGATGG GATGTTCAAT
    AGCTGGCGGT GGTGGGTTCA TCCCACAAGT CAAATCCACC TTGATTTTAC
    ATGTGGAACA ACTATAAAAG TACTTCGCTG GCTTTGTTTC TCCACACAAA
    GCACAGAAAC AACTCCACCA TCCCTCTTCA TATGTGAGCA AGAGAGGATG
    TTGGGGGTGG AAAAGATGGT TGATCTCAGA TGGGAGCTCA ACGCACTCCT
    TATGCATCCA AACAATAGGA TCATTGCAAA AGTAGCCGTT GTAGATGGCA
    CCTGTTACAG AGCAGATATG ACATCTAGCG TTGATGTACC GAGGAGCAGG
    TTGAAGAGAA TAATCGCGAA AGGGTAGTTG TACTGCTGAT GTATCCATGT
    ATTGATCGAT GGAAGTGATC TTGCGTGTTT CTTTGGTGAG ATCACGAAGT
    CNAACCGGAA GACAGCAATA TATTTATCTT CTTGTNTATA AATAAATAAA
    AATATGAAAA ATGTATGTTA TATATGTTGC CTTCNCAAAC

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR