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13-5758-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24135057 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5758-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTC 
    ATCCTCTCAT GCTCGTCGAA TCACGCAATC NCNGNCCGAT ANNCNANANC 
    GAAGCACTTA GATTTCTATG TGGGCAACAA CCGCATGGTA TTCTTTATCA 
    TTGTTCTATC TGCAACTTCA CACTGTGCAT TGGTTGTATC AAATCACCAC 
    CACCTCTTGT TGTCGAGAAT GTGAAGACGC ACAAGCATCC TCTTACTTTC 
    TTTCCAAGAG GAGTCTACTG CACTTGTAAC GTTTGTGGGG TAAAAGGACT 
    TATACTCTCT TATATGTGTC TTCAGTGTGG TTTTGCGGTC CATTGTAGTT 
    GTGTAGACTT ACCTCAAGTC ATGAACATAA ATCGTCATGA TCATCGCATT 
    TCTTTCACAC AGCATCTTGG TCCTGGGTAT TTGAACTGTG GAGTTTGCCG 
    AAGAAGTGTA TGCCAATTCA ATGGAGCTTA TTCTTGCTTA GTTTGCCCCA 
    ACTATGCAGT TCATTCACGG TGTGCAACAA GATATGACAT ATGGGATGGT 
    GTGGAACTGG AAGGGAAAGC TGAGAATATT GAGGATATTG CGCCATTTAA 
    GGTGGTTGGG GATGACTTGA TTCGTCATTT TANTCACAGC AAACATTCTT 
    TAAGACTCCA CAAGAACAAT ATCATTTATG ATGATAGTAC ACGATGTGAA 
    GCATGTGGCC ATCCAGTCGA ATTTGGTCGA ATATACAATT GNGAGGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24135052 [Map]; Strand: c
      • AT5G59930.1 - [+] show detail - Cysteine/Histidine-rich C1 domain family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-5758-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA GTGACAAGGA TGATTTACCT CTTTCGAGAG 
    ATGGATGCAG CCCACGTGGA AGTACAACTC GCATCCAAGA CATGAATAGG 
    ATGATCCAAT AATTCTATTC TTGCAAACTT CACAAGGGGT TTTCTCCTGT 
    CTTTTCTTCA GGAAGACAAG TGGATGGTCA TGGCAGATGG GATGTTCAAT 
    AGCTGGCGGT GGTGGGTTCA TCCCACAAGT CAAATCCACC TTGATTTTAC 
    ATGTGGAACA ACTATAAAAG TACTTCGCTG GCTTTGTTTC TCCACACAAA 
    GCACAGAAAC AACTCCACCA TCCCTCTTCA TATGTGAGCA AGAGAGGATG 
    TTGGGGGTGG AAAAGATGGT TGATCTCAGA TGGGAGCTCA ACGCACTCCT 
    TATGCATCCA AACAATAGGA TCATTGCAAA AGTAGCCGTT GTAGATGGCA 
    CCTGTTACAG AGCAGATATG ACATCTAGCG TTGATGTACC GAGGAGCAGG 
    TTGAAGAGAA TAATCGCGAA AGGGTAGTTG TACTGCTGAT GTATCCATGT 
    ATTGATCGAT GGAAGTGATC TTGCGTGTTT CTTTGGTGAG ATCACGAAGT 
    CNAACCGGAA GACAGCAATA TATTTATCTT CTTGTNTATA AATAAATAAA 
    AATATGAAAA ATGTATGTTA TATATGTTGC CTTCNCAAAC

AT5G59930.1

Model type
Protein coding
Short Description
Cysteine/Histidine-rich C1 domain family protein
Computational Description
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: intracellular signaling pathway; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, ZZ-type (InterPro:IPR000433), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G59940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR