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13-5780-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3094625 [Map]; Strand: w
      • AT1G09560.1 - [+] show detail - germin-like protein 5
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5780-1 - 5-prime edge 
    TTCCTGACAA CATCTTGGCT CAAGCCTTTC AGACTTCTCC AGGAACTGTT 
    AAACACATCA AATCCAAGTT CCAACCCAAG AGATGATCAT CACCCTTCCT 
    TTATATTCAT TACTACAGTT CTGTTTTTTT CTAAAGGGAA GATCTTTTTA 
    TCTTCTTTGA TTTGTCTTCT GTAATAAAAA AGGAACAATA ACTGATGATC 
    TTCAGTGTGC ATTTGAGCTC CATAGTCTCA TGTATTCGTC TTCTTGTATA 
    ATCCATATTA TTTTTTGTTC AAAGTTGACT AAAGACAGGT AAGAAGTCGA 
    GGTTGATCTA ATCTAAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3094509 [Map]; Strand: w
      • AT1G09560.1 - [+] show detail - germin-like protein 5
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-5780-1 - 3-prime edge 
    GTCAGGAACA GGAGGAGTAG AACCAAACAA AGTAGCACCA AGAGATTGAG 
    TTCCAGGAAG CTGACTATTG AAAGCTGCAA TAACAGAAGC AGGGACATCA 
    CCATTGTTCT TCTGGAAATG GACAAGTCCT TTGGGGAAAG CAAAGACATC 
    TCCTTTCTTG AGAGATTGAG AGATTAGCTT ATTGGCAGTA GTGAGAAACC 
    CAACGTCAAG TGTTCCTTCG AGGACGAAGA CGATTTCAGT GGCACGTGGG 
    TGGGTGTGAG GTGGGTTTAA ACCACCTGGT GCGTAGTCAA TACGAGAGAG 
    GGAGACACCG AGAGTGTTGA GTCCTGGGAT TGTCATAACG TTAGCTCCAG 
    TGACTAAGGC ACCGAATGTG TTGTTGGTAA GACCTGGTTT AGCTAATCCT 
    TGTGAGAAGA AATCGGCTGA TGTGACTGTA GCTGCGTCTT TGCAAGGGAA 
    GCCATTGATT TTGATTCCTG CAAAAAAGAA AAACAAGAAA GAAATTAGAA 
    ATTGAATCTT TTTCTAGGAA AAGAGATGAA AGTAAAGGTT TTTGCAACTA 
    CCAGNCNNGG CNGTNGACCA CCCGTGNNCT TNAATCNTGT NANGATCTGN 
    NGAGGANGAN ATGANNAANG NNACNGNNGN NANGANGNGA GANANNNNNA 
    NTNGNNNNNN CNTNGNNNNT NNNNGNGNNG N

AT1G09560.1

Model type
Protein coding
Short Description
germin-like protein 5
Curator Summary
germin-like protein (GLP5)
Computational Description
germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR