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13-5788-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2414662 [Map]; Strand: c
      • AT1G07795.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: -379; Region: promoter
    Flanking Genome Sequence: 13-5788-1 - 5-prime edge 
    TCTANGAGTN TGTNCTGCGG TTGCTATGTC ACAGTGTATG ATCNGCTCGC 
    TGCACTCTTN ATGTAGCATA CAANATTCCA CGAACANTGG NCACCAGNAN 
    TATTCTTTCT ANCTTCCCAG CTNGACCACG CGTNCCNTAN AACCGTAGAC 
    ACAAAAGCCA TCTCCGGAGC AAACGAAGCG ACGGCCACCG TAAACATTAG 
    AAGCACCGTC CACGTGGCAG CCTGAGCGAT GACCGGCCAA CGGTCAGAGA 
    CACTCCGTAG AAACGGCTCC ATTAGCGATG GAAGACGGTG ATACATCTTG 
    ATCAGAAGAA ATGGGGATTG TTTTAGCGTG GATCAAAAGA AATTAGGTGT 
    TGGTTTGCGA GGAAACGAAA AGATTGTGAG ATCGATGAGC AAAAACCAGA 
    GCTTGTTTGA TTGGTGCGGT TTATGTGTTT GGAAACGGAA ATGAAAATGG 
    AAAGGCTGCT TCTTTGCACG TTTAACTAAC TACTCTTCTT TCCCATACAC 
    ACACAGAGAG TTGTTAATTA CGAATTTACC CTTCCCTTTG AACTCTTCTC 
    TTCTTCTTTT GCCCTTNCGG GTCGTCTCCT TNCCCTTTGA CACTCCCACG 
    TTTTCAGCAA TATCAATTTT TTGTTTAAAT CGACGGCTGT ATTAGTTGGG 
    TTGTTAAGAA ATTTCAGACT CG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2414775 [Map]; Strand: c
      • AT1G07795.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon1 (CDS)
      • AT1G07800.1 - [+] show detail - transposable element gene
        Distance: -266; Region: promoter
    Flanking Genome Sequence: 13-5788-1 - 3-prime edge 
    GCGGTTATGG TCACTGCTTC GGCTTGTTTG ATCCGATCAT GTATTGGCAC 
    GGAGAATGTG GATGATTTTT AATAAACACT TGTAAATTAA TTAATAATCT 
    TGTATTCAGT TACTACATAA CATCCACCAT TTTGTTATTC CAAATCACNG 
    ACATTATATT AAGCTGCGTC GTAGAATAGT TGACATTTGT CAGTTTTAAC 
    CCAACAATTT GATCTGTTAT GTTATCCACG ACCCAAAATC ACAACTAAAC 
    CATTTGACAT TCCGTTTTGC CATCGTCCGG TTTTAAATC

AT1G07795.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G28725.1); Has 38 Blast hits to 38 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G07800.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, similar to putative reverse transcriptase., blastp match of 24% identity and 5.3e-10 P-value to GP|21450442|gb|AAM54146.1|AC104616_5|AC104616 putative reverse transcriptase. {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR