1. Home
  2. Mutant Lines
  3. 13-5798-1

13-5798-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28894587 [Map]; Strand: w
      • AT1G76920.1 - [+] show detail - F-box family protein
        Distance: 911; Region: intergenic
      • AT1G76930.1 - [+] show detail - extensin 4
        Distance: 714; Region: intergenic
    Flanking Genome Sequence: 13-5798-1 - 3-prime edge
    ATTATTGGTT ACCTTAAGCT ATTTTGGAAA AAGGAGGCAG GTCTTCATAC 
    TTCTTGTCTT GAAATTATTT AAGTGGTTAG AGAGAAAATC ATAAGAAAAT
    ACGGAGTATT TGACTATTGC AAAATTAAAA TCTATGTAAG AATAAGACAT
    GTATAATCTG TACATGTTTG TTTGTTCGTT TATAATCTTA TTATTGTCGG
    GGTTTTCCGT AAATTATATG TCTCATTCGG ACTTAGGTCT TAGACTATCT
    GTCTTTCTTT TTCATCTCTT TTACTCTTTG CATACATTAA CATTAGTCAA
    GTCAACTATA TTTTTTGGAT C

AT1G76920.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Kelch repeat type 2 (InterPro:IPR011498); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G61590.2); Has 279 Blast hits to 279 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 279; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G76930.1

Model type
Protein coding
Short Description
extensin 4
Curator Summary
Encodes an Arabidopsis extensin gene that belongs to cell-wall hydroxyproline-rich glycoproteins. The cross-link of extensins enforces cell wall strength. Transgenic plants overexpressing this gene show an increase in stem thickness.
Computational Description
extensin 4 (EXT4); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: response to jasmonic acid stimulus, response to wounding, response to abscisic acid stimulus, response to salicylic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: extensin 3 (TAIR:AT1G21310.1); Has 70571 Blast hits to 25422 proteins in 1351 species: Archae - 162; Bacteria - 9676; Metazoa - 26960; Fungi - 9190; Plants - 12813; Viruses - 2187; Other Eukaryotes - 9583 (source: NCBI BLink).
Link
InterPro Scan - TAIR