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13-5808-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
vascular leaf (PO:0009025)
  • abnormal (PATO:0000460)
    (Leaves::abnormal shape)
seedling (PO:0008037)
  • abnormal (PATO:0000460)
    (Seedling::abnormal shape)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8049651 [Map]; Strand: w
      • AT1G22740.1 - [+] show detail - RAB GTPase homolog G3B
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 13-5808-1 - 5-prime edge 
    GGGNAAACTA ACAAAATCGG TTATACGATA ACGGTCAGCC TGAGGCTTGT 
    CACATTGCAA GTGAGTTTCT TTGTTTGTTT TTTTTTGGTT TAAATTGTTG 
    TCGATCTTTT AAGANAAGAG TGTATATGAA TTATTATTAT TATTGTAATT 
    GTGTTAANAT ATGGGACACT GCTGGGCAAG AGAGGTTTCA AAGTCTTGGT 
    GTTGCCTTTC TATAGAGGTG CAGATTGTTG TGTTCTTGTC TATGATGTGA 
    ATCACTTGAA GTCATTTGAA TCTCTCGACA ATTGGCACAA CGAGTTTCTT 
    ACACGGGTTT TTTTTTNGCT TTNNCCATCN CNTTTTNTNT TCNNCCAAAA 
    ATTCTTTNTT TTAGGNNCTG ANANTNGTTT TTTGGGGATT TTNGGNCCNG 
    GCTTNTCCNC GNNNCCCAAN GGCATCCCCT TTTNNNCNNC TNGGAAAAAA 
    GGNNGATTTT GNNGGNGNAA ATACCCGNGG GGGANGTCCT NTNANNTTTA 
    AGTTNNNANN CCGGNCCGNN NACCCCCCCN CCCCCCAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8049620 [Map]; Strand: w
      • AT1G22740.1 - [+] show detail - RAB GTPase homolog G3B
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-5808-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    TGTCATCAAT TTGAAGCTCC TTAGTGACAA AATCAGCTCC GATCGTAGCT 
    TTGTACTGTT GACTAAACTT GTTATTCACA TATCTACAAA TTGAAAAAAA 
    AAAAANNCAA NNTTTTTTTT TTNNCCCCNC CGNCCCNAAA ANNAAAATTN 
    CCAAAANNAA AAAANCCCAA NAAAAAAAAA NCNAAAAGNT TTNNTGGGNA 
    NCCNGGNTNN NNAANNNNNN TTTNCCCNCC CNNGGNNTTT TNGCCCCNAA 
    ANCCCCCCCC NGGNAANGNT TNAGGGGNNN NCCCNNCGGG AAAAAANCCC 
    CCNGGGGGNA AAAAAAANCC NNCCCCNNNN NCCCNAAAAN NNNAANNTNG 
    GNAAAANGTC GGTTTNNNGN NNNNNNNNTT TTAAAAAANN NNNNNNTNNC 
    NAATNNNCCN TTTTTTTTNA AAAAAANAAA NGGGGCCCCC CCCCCNNTTT 
    TTNGGGGGGG GGGAAANCCG GGGGGGAAAA ANGAAAGGNN CCCCCANTTC 
    NATTTTTNGG GAACNAAAAA AAATTTTTNC NGGANAAANC CGGGGCCNGG 
    GGGGNGGNCC CCNTTTTNAA AAAGGNANNN TNNNNAAAAN NNAAAAAAAA 
    ANNNNNNNNN GAAAAAATTT NNCNGGNGNG NNNNNTTTNN TTNNCNANGG 
    GNACNAAAAA ANNGGGGGNN NAAAAANANA NNNNNGGNNT ANANAAAACC 
    N

AT1G22740.1

Model type
Protein coding
Short Description
RAB GTPase homolog G3B
Curator Summary
GTP-binding protein Rab7
Computational Description
RAB GTPase homolog G3B (RABG3B); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3A (TAIR:AT4G09720.1); Has 25691 Blast hits to 25666 proteins in 724 species: Archae - 21; Bacteria - 135; Metazoa - 13533; Fungi - 3489; Plants - 2837; Viruses - 20; Other Eukaryotes - 5656 (source: NCBI BLink).
Link
InterPro Scan - TAIR