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Mutant Lines
13-5810-1

13-5810-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 151361 [Map]; Strand: w
- AT4G00340.1 - [+] show detail - receptor-like protein kinase 4
  Distance: 0; Region: exon2 (CDS)
- AT4G00350.1 - [+] show detail - MATE efflux family protein
  Distance: -558; Region: promoter

GCAATGGGAA CGGTAGTGAA GATGCTTGAA GGAGTTGTGG AGGTGACGGT 
TCCTCCACCG CCTAAATTAA TACAAGCTCT TGTCTCCGGC GATTCATACC 
GAGGAGTGAG CNGGCACTAG CTGTAGTGAA GGCCATGGCT GTTCGGATCT 
CAATACAGGT TTGTCTAGCC CTGGCTCACG GTCGTCTTTT GGTAGACCTT 
CTCCTTGATC AATTTTGTAA GGTGATTTGG TCAAAACCAG CCTTAAATGT 
TATAAGTGTT GCTCTCTAAG AGGGTTTAAT TAGTTTAAAC TGTATTTGTT 
GGTTGTATGA TATTTGACTT AATCGACATT AACAGTTAAA ACCATGGATT 
ATGTCTTTCT TCTTAGTTTG AAAGTTCTTG TCACTTTGAT AATCTTCTAA 
TGGCATATAT GTAAATTCTT ACAGAATGTA TTGTATGAGA ATCATTACGT 
GATTGAATCA ATAAACCCAT GTCGATACTT TAAACTATAT GAACGGTCAC 
AATAAACCCA TGTTCTCTCT TCTTCTACTC CACGGCTAAC CTTATCTTTA 
GGCAACCAGA AACACAAATT CCAGAACAAA ACNTAAAAAA GAATCTCTTG 
GNCTTGTCTG CTTTCAATCC TCATGGTCTN TAATNCTCCC CAGGNGGAGA 
AATTTAAAAA CTAAAACAAA ATTTNGCCCN AAACCGGGGG AAAATGGAAA 
NTC

3 prime edge [+] show sequence

Chromosome: 4; Position: 151245 [Map]; Strand: w
- AT4G00340.1 - [+] show detail - receptor-like protein kinase 4
  Distance: 0; Region: exon2 (CDS)
- AT4G00350.1 - [+] show detail - MATE efflux family protein
  Distance: -674; Region: promoter

CCCATTGCTG GCCTTATCTC TTCATTGTCT TGTATGCACC ATATCGCCAC 
CGTTGCCATC CTCGTCACCT CTTCAGTGTT ATATTCTCCG TTGAGTCTAG 
AGTCAACCAC AGAGTCCACA TTGCCTTGTA TGATCTCACG CGCTGCCCAT 
GGCGGAAAGA ACCTGAAAAG GGATTCATTT CAATGTATAT GTTTTTTTCT 
CTCTTACAAT TGATTCCAAG TAAAAGACAT TCTCTAAATA CCATTTCTCT 
GGTTCTGTCT CTTTCTCTCC CAGTGTATCG CTATTAACAA TGACATTTCT 
TCTACCACCG ATCAGCTCGA GCAATGTCAT TCCAAAGCTA TACACATCAG 
CTTTTGTCGT GATGGGCAAA CCAGATATCC ATTCGGGAGC CACGTAGCCC 
CATGTCCCTC TCATCGTGGC TAGAACTCTG CTGAAGTCAC GTCCAAGGAG 
CTTAGCCAAG CCAAAATCAG ACACTTTGGC GTTGTAATCA CTGTCCAAAA 
GAATGTTCTC CGGTTTGATA TCACAGNGTA TAATACAGGT CCCTGCATNC 
TTCATGCCAG TACGCGATCC CTTTGGCAGT ACCTAACGCG ATCCTGAAAC 
NGGGNTNCCA NCTTAGCAAA TTTGGGGCTT GTTCTANANA NATNGGAACT 
CANGGATC

AT4G00340.1

Model type: Protein coding
Short Description: receptor-like protein kinase 4
Curator Summary: Encodes a receptor-like protein kinase that is expressed in roots.
Computational Description: receptor-like protein kinase 4 (RLK4); FUNCTIONS IN: sugar binding, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT2G19130.1); Has 118915 Blast hits to 117390 proteins in 4385 species: Archae - 97; Bacteria - 13085; Metazoa - 43904; Fungi - 9417; Plants - 35014; Viruses - 433; Other Eukaryotes - 16965 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00350.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link: InterPro Scan - TAIR