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13-5824-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 95167 [Map]; Strand: c
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 13-5824-1 - 5-prime edge 
    GGACTCGTGC TTGAAGTACT TGGCGCCGAT TATTTTGCTG TTGAAGTTAA 
    ATTAATTAAA TATTTCTTAT TTCAATCAGA ACCCTTATGT TAATGCATAA 
    TTCTAATTTG CTCCCTAAAC TCTTAAATTT ATCAACTAAC TCCTTATGTT 
    AACGCATAAT TCTAATTTGT CTCCCTAAAC TCTTAGATTC GTCAACTAAC 
    TCCTTATTTG TTTTTCTAGC AATGACATTT TCTTTAACAA TTGCTCAAGA 
    GTTCATGTTG CTTAGAGATC AAGATTCTCT AGTGATCAAA GTTTGTATTT 
    AAAATCGATT AAAGTAGAAA ATGGTAAGAG ATAAATTGTA TACTTGTTGC 
    ATCCGGTGAA ATTTTTATAA GGTCCACAAG ATCCTTTCCA TTTAGCCGGA 
    GGAGGTCCTA GACCATGGTC TAGGAAACTC TCTGAGTCTG GCGTTATTCC 
    TGATTGTTGT ATTATAGGAA GGTTTAGATA AATTATAAGA AGCATAAATG 
    AATAATATCG AATCAATTTG CATACAGAAA AAAATAAACC TGTATCAAGA 
    ACACCAATAA TAACATCTCT CTCTGCCTTT ANANGTCTTT TTGCTGNTAG 
    AGGAAGGCCA ACAAAATCCC ANGATTTTGG CNGGNGAAGT TGGCNAANNT 
    NGATTTNNAG AACACTTAAC AACTTNTTCN ATNNTNTGGN NCANNGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 95280 [Map]; Strand: c
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-5824-1 - 3-prime edge 
    AGCACGACGG CAATGTGCCT GCCGGCGAAG TTCGATCGCC GATCGATATC 
    GACGGCCATG GGACGCACAC ATCATCCACC GTAGCCGGCG TTTTAGTCGC 
    AAACGCGAGT CTCTATGGCA TAGCAAACGG CACCGCCCGC GGCGCGGTTC 
    CGTCGGCGAG GTTAGCGATG TACAAGGTTT GTTGGGCGAG ATCCGGATGT 
    GCCGACATGG ACATACTCGC CGGATTCGAA GCAGCGATTC ATGACGGCGT 
    AGACATTATC TCCATCTCTA TCGGCGGTCC AATCGCCGAT TACTCTTCCG 
    ATTCGATATC CGTCGGGTCG TTTCACGCGA TGAGGAAAGG GATC

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR