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13-5834-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6329461 [Map]; Strand: c
      • AT1G18390.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon4 (CDS)
      • AT1G18390.2 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-5834-1 - 5-prime edge 
    CTGGNAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCA TTTTATCCAT AGGAAACAGT CTAGAGAGTC 
    CAAAATCCGC AACCTAAAAT GTCGAAAACA GTAAAAAAAA CACAGAAAGA 
    AGTTAAGATT ATGATCCGAT AAAATCCCAC CAGATTGAGT AATAACCAGT 
    GTGAGTTACT GACCTTGACA TTGAAGTTTT GGTCGAGAAG GATGTTGTTG 
    GATTTAACAT CACGGTGGAT GATCTTGGAG GCGTGGAGAT ACTTCAAGGC 
    AGAGGCAGTT TCAACAGCGA TTTTGAGCCG AATAGACCAA GGAAGTGAGC 
    TAGGGTTTGC CTGTGGACCA TGTAGATGAT CAGCTAACGT GCCGTTTGCA 
    ACATACTCAT ACACTAGCAG TAAGTCCCGG CTCTGTTTTG AGGAGCATCC 
    AAAGAGAGCC ACGAGGTTTG GATGGCGTAA ACCCGTTAAG ATCTCAACTT 
    CATTCCTGAA TTGCTCTGCT CTTTTGAAGT TGTTATCGTA TAACCGTTTA 
    ACGGCTACGC TTCGTCCATC TTTAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 6343664 [Map]; Strand: c
      • AT1G18415.1 - [+] show detail - other RNA
        Distance: 0; Region: exon4 (NonCoding)
      • AT1G18420.1 - [+] show detail - Aluminium activated malate transporter family protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-5834-1 - 3-prime edge 
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTT 
    GCAGCTACTT CTCTGACAAT ATCACGGGGG TTGTGAAGAA ATTAAAGGAT 
    GTTTTGGTTA CGGCATGGGA GATGGGAACA GCTGACCCGA GGAAGATGAT 
    ATTCTCGGCG AAGATGGGTT TGGCTCTGAC ACTTACCTCT ATCCTCATCT 
    TCTTTAAGAT CCCAGGATTA GAGCTCAGCG GCCACTATCT CTGGGCAATT 
    CTTACAGTAG TTGTTATCTT CGAGTTCAGT ATAGGTATAT GCAACAGACT 
    TTACACATCA AATTTGAGCA TTCTAAAAAC TTTAATACCT GACATGTGAT 
    CTTCTCTTGT TTTTTGTATA GGAGCCACCT TTAGCAAAGG ATGTAACCGG 
    GGACTAGGAA CATTGTCCGC AGGAGGACTG GCGCTTGGCA TGTCTTGGAT 
    ATCGGAGATG ACTGGAAATT GGGCAGATGT TTTTAATGCT GCTAGCATCT 
    TTGTAGTAGG TATATATACG AAATCATGAT GTGTGGTCTA AACTAAAGCT

AT1G18390.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1); Has 21064 Blast hits to 20752 proteins in 1151 species: Archae - 24; Bacteria - 3918; Metazoa - 5271; Fungi - 1719; Plants - 7999; Viruses - 19; Other Eukaryotes - 2114 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G18390.2

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66880.1); Has 128125 Blast hits to 126473 proteins in 4812 species: Archae - 110; Bacteria - 14433; Metazoa - 47787; Fungi - 10757; Plants - 35416; Viruses - 568; Other Eukaryotes - 19054 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G18415.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G18420
Link
InterPro Scan - TAIR

AT1G18420.1

Model type
Protein coding
Short Description
Aluminium activated malate transporter family protein
Computational Description
Aluminium activated malate transporter family protein; INVOLVED IN: response to aluminum ion; CONTAINS InterPro DOMAIN/s: Malate transporter, aliminium toerance (InterPro:IPR020966); BEST Arabidopsis thaliana protein match is: aluminum-activated malate transporter 9 (TAIR:AT3G18440.1); Has 539 Blast hits to 535 proteins in 118 species: Archae - 0; Bacteria - 174; Metazoa - 1; Fungi - 11; Plants - 341; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR