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13-5838-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5404500 [Map]; Strand: w
      • AT1G15700.1 - [+] show detail - ATPase, F1 complex, gamma subunit protein
        Distance: -682; Region: promoter
      • AT1G15710.1 - [+] show detail - prephenate dehydrogenase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-5838-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTNC 
    TGTCNNTNGA TNGGNNGNTT CATNGTATGC NANCTTGGAC NGATATCGCN 
    NCAATATCAC CAGGNCGANG CCGGTCTGCG CCAGCAGGGC GGATGAAGAT 
    GCGAGCGAGC CTCAAAAATA AACGGATCAA TTTTATGTCG TGGCCTAAAC 
    GTGGTGATGC NTGATTGACC CAAGAAAAAC AAAATGCTAA ATACACAACA 
    ACACAAGGAC CATAATGGAA ATAAAAAATT GAGGTCAAAA TTAAAAGTCG 
    TTCCAAGGAA ATTTGTAGGT ACTGTTTTGT ATTCATTTGT ATTTAGTAAC 
    CCGCATTTAC AATATTTCTT TTTCTGAAGG ACTAGAGTTT TTATTTGTCC 
    ATAATTTTAT TTTGATTTGT TACTTTAAAG TTCAATCTCT TCCTATATAT 
    GAATCTTTAA AAAGAAAATT TCGTAATTTT CATATGCTGA CTATAGTTGT 
    TGTTTTTTGG TTTTCTATTA ATTTGGCTAT TTGTAAGTAA TTTTTATTAN 
    GGATTTAGGA NGGTTATTGA TATTTCCCTC GTTTTTCTCA TAGAAAAAAA 
    AAAAAAAAAA ACNNNNANTT TNNACNTTTT GGGNNAATTT TTTGACNTNN 
    TGNCCCCCTT NTNACCNTGN ATTTTTCNNA AAAANCCCCN NANNGGNNCN 
    TTTTNTTTNN CGCGNTTTCT TTNCNNGNAA NAAANAANAN TNTTAAANCC 
    NNTNAANNGT AGAGNGGNGT TNTTTTTNCC NAANAAAAAA AAA

AT1G15700.1

Model type
Protein coding
Short Description
ATPase, F1 complex, gamma subunit protein
Curator Summary
One of two genes that encode the gamma subunit of Arabidopsis chloroplast ATP synthase. It is thought to be involved in the regulation of the ATP synthase activity.
Computational Description
ATPC2; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: chloroplast ATP synthase complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPase, F1 complex, gamma subunit protein (TAIR:AT4G04640.1); Has 9547 Blast hits to 9544 proteins in 2715 species: Archae - 5; Bacteria - 5540; Metazoa - 280; Fungi - 148; Plants - 177; Viruses - 0; Other Eukaryotes - 3397 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G15710.1

Model type
Protein coding
Short Description
prephenate dehydrogenase family protein
Computational Description
prephenate dehydrogenase family protein; FUNCTIONS IN: prephenate dehydrogenase (NADP+) activity; INVOLVED IN: tyrosine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydrogenase (InterPro:IPR003099), Arogenate/prephenate dehydrogenase (InterPro:IPR012070); BEST Arabidopsis thaliana protein match is: arogenate dehydrogenase (TAIR:AT5G34930.1); Has 919 Blast hits to 907 proteins in 395 species: Archae - 81; Bacteria - 505; Metazoa - 3; Fungi - 100; Plants - 115; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).
Link
InterPro Scan - TAIR