Home
Mutant Lines
13-5843-1

13-5843-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 3; Position: 2782695 [Map]; Strand: w
  - AT3G09080.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
    Distance: -910; Region: promoter
  - AT3G09085.1 - [+] show detail - Protein of unknown function (DUF962)
    Distance: 0; Region: exon1 (3UTR)
Flanking Genome Sequence: 13-5843-1 - 5-prime edge
```
GGGANAAAAC TAACAAAATC CGGTTATACG ATAACGGTCG GTACGGGATT 
TTCCCATCCT ACTTTCATCC TCTTCAAATT CAAATTTCGT ATGAACAAAA 
CATAAATTCT CAAGAAATTA AGTTGTGCAA AAACTTTATA AACTCAGAAA 
AGAGTTGATC TAATACTAAA GTCGAATTAC ATTTTAAAAA GGTACAGAAA 
TCGAAAACTC TAGCACGAAA TTGTCCCTGG ATC
```

3 prime edge [+] show sequence

Chromosome: 3; Position: 2782687 [Map]; Strand: w
- AT3G09080.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
  Distance: -902; Region: promoter
- AT3G09085.1 - [+] show detail - Protein of unknown function (DUF962)
  Distance: 0; Region: exon1 (3UTR)

TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATAAATG 
ATCATTCGCA AACAACGATT CCATGAAGTA ATTACAAACT GGAGTCTAAA 
ATCCAATCGC AGAACGCAAT AAGAAGAATC AAGAACAATT CTATAGAGAT 
ATCTGCTGCT GCTTCAAGAG AGCTGCAACA ATGGCCTCTT ACCAAGTCTC 
TTCATCTCTC TCTCCATGCT TCCTGTGAGC ATCAGACTAA ACATCTTGAG 
ATCGCAGAGA AACGACCAAA GCGGATGCCC AAAGCTCGCC GGAACATTCC 
CTTCCACGAA GAAGTGGCTA TACCACGCGA ATCCGTACCC AAGCAGAGGC 
ACCAGAGCTA AGAACCACCA GTTGATCAAA ATCGAACATA TCAAAGCAAC 
GATGCTCGCG ATGATACCTA TGAAGTGCAA CCTTCGCGTC GATGGATTCG 
AGTGTTGCAT CATGTAGAAA GGCCAGAACT CCTCAAAGCT

AT3G09080.1

Model type: Protein coding
Short Description: Transducin/WD40 repeat-like superfamily protein
Computational Description: Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 14743 Blast hits to 9426 proteins in 454 species: Archae - 42; Bacteria - 3876; Metazoa - 4498; Fungi - 2945; Plants - 1499; Viruses - 0; Other Eukaryotes - 1883 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G09085.1

Model type: Protein coding
Short Description: Protein of unknown function (DUF962)
Computational Description: Protein of unknown function (DUF962); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF962 (InterPro:IPR009305); Has 704 Blast hits to 704 proteins in 265 species: Archae - 0; Bacteria - 429; Metazoa - 0; Fungi - 2; Plants - 37; Viruses - 0; Other Eukaryotes - 236 (source: NCBI BLink).
Link: InterPro Scan - TAIR