1. Home
  2. Mutant Lines
  3. 13-5852-1

13-5852-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14942656 [Map]; Strand: w
      • AT4G30600.1 - [+] show detail - signal recognition particle receptor alpha subunit family protein
        Distance: -1638; Region: intergenic
      • AT4G30610.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -1473; Region: intergenic
    Flanking Genome Sequence: 13-5852-1 - 5-prime edge 
    NACTAGCGAN NANGTGNCCG CGGNTNTATG TNANAAATGT ATGANCTGCA 
    NCGCTTGCAC ATNTNANTGN AGATACNNAA TGCCACNAGC NANGGNCACC 
    GNAGNNGACN NTNTATCNTC CCANCTNGAC CACGCGNNCG NNNNAATTTA 
    GATATGTATA TATATCAGTA TATGCAAATT TAGGTGTCAT ACATCTTACG 
    NCTCCATTTA AAATTGTCAA TTGTGTTGTA AATTGCAAAT TTAAGTAAAT 
    NTGATCTTTT AAGTGTTTGA AATTTTATAA TGTNATNNGT TGNNTATCNA 
    AAATATTACT ATANNAATCG AACTGATATA TTTNTAAAAT TCATGANATG 
    NTNGNCGGCT CATAAGCNAC TTAGANTCNN ATGAAATNAT GCGGAATAAA 
    ACAATTGTGG ATGCAATNTN TNCAGAGATN TTATAGAAAA AAATGTNNNG 
    NAGAGATNAN TNTCNTAGNA NAANATANGC GGTNAAGNAN ACNAANTNTT 
    TNACNAGNAT NNNTAACCTT GTGATNANGA TANNAAGNGA GCGTNNCGGN 
    GCNNGCGNGA CNTTGCNNGA CATNGNTNNN TNACCCANNT TANATNCCCA 
    CTCNAGCCAC NNNAGGGNAA NAAGNGGNNN CNNTNAACNN TTATTGNNCA 
    NNCCNNCGNA ANGAGANTGN TNCANNGTNN NGAANANNTT ANGANAGCGG 
    AAGCNGNGGN TGNGGNNNGG GANNGNNGNG NNGTTTCGNG AANANAACNA 
    A

AT4G30600.1

Model type
Protein coding
Short Description
signal recognition particle receptor alpha subunit family protein
Computational Description
signal recognition particle receptor alpha subunit family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, signal recognition particle binding, GTP binding, GTPase activity, nucleotide binding; INVOLVED IN: intracellular protein transport, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: endoplasmic reticulum, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle receptor, alpha subunit, N-terminal (InterPro:IPR007222), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit (TAIR:AT1G15310.1); Has 16825 Blast hits to 16740 proteins in 2884 species: Archae - 472; Bacteria - 10592; Metazoa - 551; Fungi - 433; Plants - 279; Viruses - 3; Other Eukaryotes - 4495 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G30610.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Curator Summary
Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.
Computational Description
BRI1 SUPPRESSOR 1 (BRS1); CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 22 (TAIR:AT2G24000.1); Has 3492 Blast hits to 3440 proteins in 297 species: Archae - 0; Bacteria - 59; Metazoa - 632; Fungi - 854; Plants - 1543; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink).
Link
InterPro Scan - TAIR