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13-5876-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24498180 [Map]; Strand: c
      • AT5G60890.1 - [+] show detail - myb domain protein 34
        Distance: 1829; Region: intergenic
      • AT5G60900.1 - [+] show detail - receptor-like protein kinase 1
        Distance: 287; Region: intergenic
    Flanking Genome Sequence: 13-5876-1 - 3-prime edge 
    TGAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCTTAT 
    GTTATTAGAA ATTCTACGTT AATTTATTAA GAAAAATGAT TTCCGAATCT 
    TTGAAAAGAC TTGCACAATT AGTTTAACCA TTCATTTAAC ACGATTGCAT 
    AGCCAGTTCT GAAATTTGTA GCAGTGTCAA TTTTGTTTAA CGAAATTGTA 
    ATAGTTGCAA TTTGTGTCAT ACCGTGCTGG TTATATCAAC ATAATTAAAA 
    AAAGGTGTGA TTATTTAACG TAATATCAAT GATTGGAGTT TATTCCATAC 
    AAAAGTATAA TAACTTTATT TTGTTTTTTT ATCAACTTAT CAAACAAGTG 
    ACACTGGATC ACTAGACAAA GATTCATCAG ACCAAGTGAA AGTGCTATAA 
    GGAGACGGAT TTGGAGGATC AAAAACTTGA GTCACACCTT CAAGCATCTG 
    TGTAACATTT CTCATGTTAG GTCTCATCCC ATGCTCTTCT TGTATACACC 
    ATATCGCTAT TTTCACATAT CTCTCCACCG TATCCATGTC ATCCATTGCC 
    TCTGAATCCT CCTCAGTCAG ATCTTCCAAC CTTCCTTGTC GAAAACAATC 
    GTAAGCCCAA TTGATGAGAA TCACGTTATC CTCAAGGTCG ACTGCTTTCT 
    TGCAGCACAC GATTTCCAAA AGCATTACTC CATAGCTATA AACATCTACT 
    TTGGATGTAA TGGGGACTGT TCCTGAACCA TTCANGGG

AT5G60890.1

Model type
Protein coding
Short Description
myb domain protein 34
Curator Summary
Myb-like transcription factor that modulates expression of ASA1, a key point of control in the tryptophan pathway; mutant has deregulated expression of ASA1 in dominant allele. Loss of function allele suggests ATR1 also functions at a control point for regulating indole glucosinolate homeostasis.
Computational Description
myb domain protein 34 (MYB34); FUNCTIONS IN: DNA binding, transcription activator activity, kinase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: tryptophan biosynthetic process, response to jasmonic acid stimulus, defense response to insect, cellular response to sulfur starvation, indole glucosinolate biosynthetic process; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 122 (TAIR:AT1G74080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60900.1

Model type
Protein coding
Short Description
receptor-like protein kinase 1
Curator Summary
Encodes a receptor-like protein kinase.
Computational Description
receptor-like protein kinase 1 (RLK1); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: lectin protein kinase family protein (TAIR:AT1G34300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR