1. Home
  2. Mutant Lines
  3. 13-5884-1

13-5884-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25239481 [Map]; Strand: c
      • AT1G67370.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron21 (CDS)
    Flanking Genome Sequence: 13-5884-1 - 5-prime edge
    GTCAACTGTA GCCAAGCCTC ACAGGACAGA CGTGGCAGGA AAACCAGCAT 
    GGTATCTTAC ACTAAACCAT ATAAACTCTT TCTACGTTTT TCAACTTTTT
    AGTTATTTGC TTGAAAGAAA CTGACATGGT TCTTGTGATT GTTATTCCTA
    CAGGTGAGGG AGCCTATTCT GCAGTACTCC AAGCGTCAGA AATCTCAAGC
    TAATTGAAGA TACCACCTCT ATCAGACACC ATAACCACCT TCTTCAGTGG
    TGATGATATT AACCTGATAC ACTCGCTTTT TATTGCTTTA TTTCTCCTCT
    GCATTCAGAC TATTTTCATA CTCCATGCTT GTTATTATCT CTCTTAAAGT
    ATCATATCTT ATCGCACTTT TGGGAAGATA ATTTATTGCA TATCAAACTT
    TAACACTTAT TAGTTATTAC TGTGAGTATT ATTCACTAAT GCTCTACATT
    CTTTTATGGA ACAAGTATGA AGTATAGGAC TATATTCGTT TTAAATTCCC
    CTGTCGATCA CTTTAATCCA AAAACTTTAA CTTTAGATAC TAACACGTGT
    TGAAACGTGT ACTACGCCAT TCCACGCGTC AGGAAATCGA GCACCGCCGA
    ATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25239597 [Map]; Strand: c
      • AT1G67370.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: exon21 (CDS)
    Flanking Genome Sequence: 13-5884-1 - 3-prime edge
    CAGTTGACTG TCTCGGCTTC CTTAACAGCT CCACCATGTA CCGCAAAGCT 
    CTCCCTCGAA GCCGCAGGCT GAGTGAGCAA CAATAACCAA ATTAGCAAAC
    ACTTAAAAGA GTCATATACA CAGTAAGATA TGTCTATCAC TCTCAGTGGT
    GATTTCATAC TACCTGTGCC TTGTTGCTAA TGGGAGTGTT CCCAGCTTTA
    GAGATAGTCT GTTCACTTAG AACAGAGCCG TTCTGCTGCA TCCCACCAGA
    TCTTCCTTTC GTGCGTGTGA AGTCTGAACC TATGGAGTGG ATACCTCCAC
    AGGTAGATAC ATCTGTTTGT TTCAAATATG TCAGATCGAT TAAAACAGCT
    TAAAACTTGG GTTGCAAAGT GCAAATAAGG AGTGTACCTG CGGTTACTTT
    GGCATCTGGG CCGTTTGTCT TGTTAATAGT TTCGGTAACA TCCACATCCT
    GTGAAACCAT TCACATTAGA AAGCTGTTCC AAAGAGGTAT TCTGGTTTTC
    AAGTATTATT ACCATATCAT CGGTGGCAAG AACCTTTCTG ACTTCATTTA
    GCTTCTTCTC AGTTAGACTA GAATGAATCA CACGCTTCCC TGTTTATAAA
    TATTGCNTCA GTGAGGAAAA AATGACNCAA CACCNACNTA ACTTAANTGG
    ANAAGGGTNT GAATTGNGGN AGCNAACCNT AN

AT1G67370.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.
Computational Description
ASYNAPTIC 1 (ASY1); CONTAINS InterPro DOMAIN/s: SWIRM (InterPro:IPR007526), DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT4G32200.1); Has 527 Blast hits to 490 proteins in 159 species: Archae - 0; Bacteria - 18; Metazoa - 158; Fungi - 114; Plants - 58; Viruses - 21; Other Eukaryotes - 158 (source: NCBI BLink).
Link
InterPro Scan - TAIR