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13-5884-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)
    (Seed yield::semi-sterile)

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25239481 [Map]; Strand: c
      • AT1G67370.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: intron21 (CDS)
    Flanking Genome Sequence: 13-5884-1 - 5-prime edge 
    GTCAACTGTA GCCAAGCCTC ACAGGACAGA CGTGGCAGGA AAACCAGCAT 
    GGTATCTTAC ACTAAACCAT ATAAACTCTT TCTACGTTTT TCAACTTTTT 
    AGTTATTTGC TTGAAAGAAA CTGACATGGT TCTTGTGATT GTTATTCCTA 
    CAGGTGAGGG AGCCTATTCT GCAGTACTCC AAGCGTCAGA AATCTCAAGC 
    TAATTGAAGA TACCACCTCT ATCAGACACC ATAACCACCT TCTTCAGTGG 
    TGATGATATT AACCTGATAC ACTCGCTTTT TATTGCTTTA TTTCTCCTCT 
    GCATTCAGAC TATTTTCATA CTCCATGCTT GTTATTATCT CTCTTAAAGT 
    ATCATATCTT ATCGCACTTT TGGGAAGATA ATTTATTGCA TATCAAACTT 
    TAACACTTAT TAGTTATTAC TGTGAGTATT ATTCACTAAT GCTCTACATT 
    CTTTTATGGA ACAAGTATGA AGTATAGGAC TATATTCGTT TTAAATTCCC 
    CTGTCGATCA CTTTAATCCA AAAACTTTAA CTTTAGATAC TAACACGTGT 
    TGAAACGTGT ACTACGCCAT TCCACGCGTC AGGAAATCGA GCACCGCCGA 
    ATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 25239597 [Map]; Strand: c
      • AT1G67370.1 - [+] show detail - DNA-binding HORMA family protein
        Distance: 0; Region: exon21 (CDS)
    Flanking Genome Sequence: 13-5884-1 - 3-prime edge 
    CAGTTGACTG TCTCGGCTTC CTTAACAGCT CCACCATGTA CCGCAAAGCT 
    CTCCCTCGAA GCCGCAGGCT GAGTGAGCAA CAATAACCAA ATTAGCAAAC 
    ACTTAAAAGA GTCATATACA CAGTAAGATA TGTCTATCAC TCTCAGTGGT 
    GATTTCATAC TACCTGTGCC TTGTTGCTAA TGGGAGTGTT CCCAGCTTTA 
    GAGATAGTCT GTTCACTTAG AACAGAGCCG TTCTGCTGCA TCCCACCAGA 
    TCTTCCTTTC GTGCGTGTGA AGTCTGAACC TATGGAGTGG ATACCTCCAC 
    AGGTAGATAC ATCTGTTTGT TTCAAATATG TCAGATCGAT TAAAACAGCT 
    TAAAACTTGG GTTGCAAAGT GCAAATAAGG AGTGTACCTG CGGTTACTTT 
    GGCATCTGGG CCGTTTGTCT TGTTAATAGT TTCGGTAACA TCCACATCCT 
    GTGAAACCAT TCACATTAGA AAGCTGTTCC AAAGAGGTAT TCTGGTTTTC 
    AAGTATTATT ACCATATCAT CGGTGGCAAG AACCTTTCTG ACTTCATTTA 
    GCTTCTTCTC AGTTAGACTA GAATGAATCA CACGCTTCCC TGTTTATAAA 
    TATTGCNTCA GTGAGGAAAA AATGACNCAA CACCNACNTA ACTTAANTGG 
    ANAAGGGTNT GAATTGNGGN AGCNAACCNT AN

AT1G67370.1

Model type
Protein coding
Short Description
DNA-binding HORMA family protein
Curator Summary
meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.
Computational Description
ASYNAPTIC 1 (ASY1); CONTAINS InterPro DOMAIN/s: SWIRM (InterPro:IPR007526), DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT4G32200.1); Has 527 Blast hits to 490 proteins in 159 species: Archae - 0; Bacteria - 18; Metazoa - 158; Fungi - 114; Plants - 58; Viruses - 21; Other Eukaryotes - 158 (source: NCBI BLink).
Link
InterPro Scan - TAIR